|
| Status |
Public on Mar 08, 2008 |
| Title |
WT_t_B_2 |
| Sample type |
RNA |
| |
|
| Source name |
WT mouse, treated with compound 106
|
| Organism |
Mus musculus |
| Characteristics |
Brain from WT mouse, treated with compound 106, replicate #2
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNeasy Lipid Tissue Mini Kit (Qiagen)
|
| Label |
Biotin
|
| Label protocol |
According to Illumina Protocol
|
| |
|
| Hybridization protocol |
According to Illumina Protocol
|
| Scan protocol |
Illumina BeadScan
|
| Description |
1729240124_H: array designation within the raw data file linked to the Series record
|
| Data processing |
Raw data was analyzed using Bioconductor packages
(www.bioconductor.org). Data was normalized using quantile
normalization. Analysis of differential expression was performed using a
linear model fitting (LIMMA package, Smyth 2005).
|
| |
|
| Submission date |
Mar 05, 2008 |
| Last update date |
Mar 07, 2008 |
| Contact name |
Giovanni Coppola |
| E-mail(s) |
gcoppola@ucla.edu
|
| Phone |
310-794-4172
|
| Organization name |
UCLA
|
| Department |
Psychiatry and Neurology
|
| Lab |
Neurogenetics
|
| Street address |
1524 Gonda, 695 Charles Young Drive South
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095 |
| Country |
USA |
| |
|
| Platform ID |
GPL6103 |
| Series (1) |
| GSE10745 |
HDAC Inhibitors Correct Frataxin Deficiency in a Friedreich Ataxia Mouse Model |
|
