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Sample GSM27151 Query DataSets for GSM27151
Status Public on Nov 05, 2004
Title HNF4a2_1+
Sample type RNA
 
Source name INS-1 cell line #1 with induced HNF4a2
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description A rat insulinoma cell line (INS-1) was generated that contains a FRT site for FLP recombinase mediated site specific integration of specific genes. In addition, the line contains the tetracycline repressor allowing tetracycline (tet) induction of the introduced gene. By comparing the gene expression profiles of uninduced and tet-induced cells, target genes of introduced transcription factor can be identified. This entry corresponds to the RNA isolated from tet-induced INS-1 cell line #1 containing hepatocyte nuclear factor-4a2 (HNF4a2).
Keywords = INS-1
Keywords = beta-cell
Keywords = HNF4a
Keywords = tetracycline
Keywords = FRT
 
Submission date Jul 21, 2004
Last update date May 27, 2005
Contact name Ludger Klein-Hitpass
E-mail(s) ludger.klein-hitpass@uni-essen.de
Phone +49 201 723 85552
Organization name Institut fuer Zellbiologie
Department Universitaetsklinikum
Lab BioChip Lab
Street address Virchowstr. 173
City Essen
ZIP/Postal code D-45122
Country Germany
 
Platform ID GPL341
Series (2)
GSE1589 Targets of HNF1b, HNF4a2 and HNF6 in INS-1 cells
GSE6428 HNF1b, HNF4a2 and HNF6 targets

Data table header descriptions
ID_REF
VALUE ‘signal’, a measure of the abundance of the transcript
ABS_CALL the call in an absolute analysis that indicates whether a transcript is reliably detected (Present, P) or not detected (Absent, A)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 349.8 P 0.039661
AFFX-BioB-M_at 328 P 0.002867
AFFX-BioB-3_at 130.6 A 0.095667
AFFX-BioC-5_at 621.8 P 0.000446
AFFX-BioC-3_at 293.8 P 0.001796
AFFX-BioDn-5_at 430.9 P 0.002275
AFFX-BioDn-3_at 3889.2 P 0.000754
AFFX-CreX-5_at 5040.8 P 0.000044
AFFX-CreX-3_at 8010.7 P 0.000044
AFFX-DapX-5_at 135.8 P 0.00039
AFFX-DapX-M_at 291.5 P 0.006871
AFFX-DapX-3_at 271.8 P 0.026111
AFFX-LysX-5_at 689.8 P 0.000044
AFFX-LysX-M_at 1257.2 P 0.00034
AFFX-LysX-3_at 2035.1 P 0.000052
AFFX-PheX-5_at 3540.5 P 0.000044
AFFX-PheX-M_at 3890.5 P 0.000044
AFFX-PheX-3_at 5380.5 P 0.000044
AFFX-ThrX-5_at 483.7 P 0.000581
AFFX-ThrX-M_at 741.9 P 0.000258

Total number of rows: 15923

Table truncated, full table size 433 Kbytes.




Supplementary data files not provided

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