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Sample GSM27157 Query DataSets for GSM27157
Status Public on Nov 05, 2004
Title HNF6_1+
Sample type RNA
 
Source name INS-1 cell line #1 with induced HNF6
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description A rat insulinoma cell line (INS-1) was generated that contains a FRT site for FLP recombinase mediated site specific integration of specific genes. In addition, the line contains the tetracycline repressor allowing tetracycline (tet) induction of the introduced gene. By comparing the gene expression profiles of uninduced and induced cells, target genes of introduced transcription factor can be identified. This entry corresponds to the RNA isolated from tet-induced INS1 cell line #1 containing hepatocyte nuclear factor-6 (HNF6; onecut1).
Keywords = INS-1
Keywords = beta-cell
Keywords = HNF6
Keywords = onecut1
Keywords = tetracycline
Keywords = FRT
 
Submission date Jul 21, 2004
Last update date May 27, 2005
Contact name Ludger Klein-Hitpass
E-mail(s) ludger.klein-hitpass@uni-essen.de
Phone +49 201 723 85552
Organization name Institut fuer Zellbiologie
Department Universitaetsklinikum
Lab BioChip Lab
Street address Virchowstr. 173
City Essen
ZIP/Postal code D-45122
Country Germany
 
Platform ID GPL341
Series (2)
GSE1589 Targets of HNF1b, HNF4a2 and HNF6 in INS-1 cells
GSE6428 HNF1b, HNF4a2 and HNF6 targets

Data table header descriptions
ID_REF
VALUE ‘signal’, a measure of the abundance of the transcript
ABS_CALL the call in an absolute analysis that indicates whether a transcript is reliably detected (Present, P) or not detected (Absent, A)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 247.6 P 0.003595
AFFX-BioB-M_at 519.9 P 0.00034
AFFX-BioB-3_at 128.8 P 0.013811
AFFX-BioC-5_at 722.7 P 0.00011
AFFX-BioC-3_at 487.6 P 0.000052
AFFX-BioDn-5_at 535.3 P 0.001248
AFFX-BioDn-3_at 3670 P 0.000169
AFFX-CreX-5_at 6959 P 0.000044
AFFX-CreX-3_at 14841.6 P 0.000044
AFFX-DapX-5_at 221.5 P 0.00011
AFFX-DapX-M_at 468.8 P 0.002867
AFFX-DapX-3_at 356.7 P 0.000258
AFFX-LysX-5_at 1345.2 P 0.000044
AFFX-LysX-M_at 1882.6 P 0.000044
AFFX-LysX-3_at 3200.2 P 0.000044
AFFX-PheX-5_at 7248.4 P 0.000044
AFFX-PheX-M_at 9042.8 P 0.000044
AFFX-PheX-3_at 10016.6 P 0.000044
AFFX-ThrX-5_at 1313.6 P 0.000052
AFFX-ThrX-M_at 1476.3 P 0.000044

Total number of rows: 15923

Table truncated, full table size 431 Kbytes.




Supplementary data files not provided

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