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Sample GSM2718483 Query DataSets for GSM2718483
Status Public on Dec 01, 2018
Title Case2_1
Sample type genomic
 
Source name Prostectomy 7_normal prostate sample
Organism Homo sapiens
Characteristics gender: Male
sample type: Prostectomy 7
disease state: Normal
Extracted molecule genomic DNA
Extraction protocol DNA was extracted and purified from fresh/frozen prostate tissue samples using Qiagen DNA/RNA Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal prostate sample
Data processing minfi R
 
Submission date Jul 26, 2017
Last update date Dec 01, 2018
Contact name Richard Marais
Organization name Cancer Research UK Manchester Institute
Department Molecular Oncology
Street address Wilmslow Road
City Manchester
ZIP/Postal code M20 4GJ
Country United Kingdom
 
Platform ID GPL21145
Series (1)
GSE101908 Genomic Evaluation of Multiparametric Magnetic Resonance Imaging -visible and -nonvisible Lesions in Clinically Localized Prostate Cancer

Data table header descriptions
ID_REF
VALUE Beta value and detection P-value
Detection_P

Data table
ID_REF VALUE Detection_P
cg00000029 0.2749331 0
cg00000103 0.6425236 0
cg00000109 0.8492571 0
cg00000155 0.9341 0
cg00000158 0.926139 0
cg00000165 0.1497865 0
cg00000221 0.8486189 0
cg00000236 0.7996353 0
cg00000289 0 0
cg00000292 0.5602785 0
cg00000321 0.4927345 0
cg00000363 0.1260275 0
cg00000540 0.7914742 0
cg00000579 0.8738183 0
cg00000596 0.7320662 0
cg00000622 0.01404523 0
cg00000658 0.7341373 0
cg00000714 0.1468632 0
cg00000721 0.8578761 0
cg00000734 0.07957423 0

Total number of rows: 866836

Table truncated, full table size 19551 Kbytes.




Supplementary file Size Download File type/resource
GSM2718483_200551600051_R04C01_Grn.idat.gz 7.1 Mb (ftp)(http) IDAT
GSM2718483_200551600051_R04C01_Red.idat.gz 7.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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