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Sample GSM277237 Query DataSets for GSM277237
Status Public on Dec 31, 2008
Title 1522628110_A
Sample type RNA
 
Source name PAXGene, whole blood
Organism Homo sapiens
Characteristics Skleroderma patient
Extracted molecule total RNA
Extraction protocol Blood samples from patients with systemic sclerosis or bacteremia, respectively, were collected in PAXgene blood RNA tubes (BD Biosciences, Heidelberg, Germany). Total RNA from PAXgene samples was prepared according to the manufacturer´s recommendations including an optional DNAse digestion step.
Label biotin
Label protocol cDNA and biotin-labeled cRNA synthesis was generated from 100 ng total RNA using the Illumina® TotalPrep™ RNA Amplification Kit (Applied Biosystems, Darmstadt, Germany).
 
Hybridization protocol cRNA (1.5 µg) was hybridized to Human-6 Expression BeadChips V1 and V2 (Illumina, San Diego, CA).
Scan protocol Scanning was performed on the Illumina(r) BeadStation 500x.
Description Skleroderma patient
Data processing BeadStudio raw data were normalized using R
 
Submission date Mar 25, 2008
Last update date Dec 19, 2012
Contact name Joachim Schultze
E-mail(s) j.schultze@uni-bonn.de
Organization name LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)
Department Genomics and Immunoregulation
Street address Carl-Troll-Strasse 31
City Bonn
State/province NRW
ZIP/Postal code 53115
Country Germany
 
Platform ID GPL6097
Series (1)
GSE10929 Comparison of consecutive microarray platforms

Data table header descriptions
ID_REF
VALUE quantiles normalized value

Data table
ID_REF VALUE
360450 89.36417889
1690139 123.3050106
5420594 146.0495133
3060411 87.00325222
450341 1081.830339
5420324 106.5886628
730162 77.20322611
4200739 152.623085
1090156 94.83361222
7050341 106.7462489
1500019 86.46854
6860601 122.6542861
430184 128.3956878
3780725 120.7893194
1400671 102.9842972
2650605 100.6488806
1660441 257.3796889
5700086 94.79647
1050280 978.1705333
4210093 109.0444906

Total number of rows: 47296

Table truncated, full table size 953 Kbytes.




Supplementary file Size Download File type/resource
GSM277237.txt.gz 505.5 Kb (ftp)(http) TXT
Processed data included within Sample table

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