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GEO accession:
Sample GSM2791
Query DataSets for GSM2791
Status
Public on Nov 21, 2002
Title
Mnk_3149-R-3
Sample type
RNA
Source name
PBMC from Rhesus Macaque
Organism
Macaca mulatta
Extracted molecule
total RNA
Description
Animal #3149
Rapid progression group
Three weeks Post infection with SIV MAC251
Submission date
Nov 21, 2002
Last update date
May 27, 2005
Contact name
Maryanne Vahey
E-mail(s)
mvahey@hivresearch.org
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL80
Series (1)
GSE512
Peripheral Blood Mononuclear Cells of Rhesus Macaques Infected with SIVmac251
Data table header descriptions
ID_REF
Positive
Number of positive probe pairs
Negative
Number of negative probe pairs
Pairs In Avg
Trimmed probe pair set
Pos Fraction
Positive/pairs used
VALUE
Average difference intensity
ABS_CALL
Absolute call od Presence or Absence of gene transcript in sample
Data table
ID_REF
Positive
Negative
Pairs In Avg
Pos Fraction
VALUE
ABS_CALL
AFFX-BioB-5_at
18
1
20
0.9
37145.1
P
AFFX-BioB-M_at
20
0
19
1
53193
P
AFFX-BioB-3_at
19
0
19
0.95
41488.2
P
AFFX-BioC-5_at
18
0
19
0.9
101084.5
P
AFFX-BioC-3_at
20
0
20
1
107657.8
P
AFFX-BioDn-5_at
19
0
20
0.95
57075.3
P
AFFX-BioDn-3_at
17
0
19
0.85
146602.5
P
AFFX-CreX-5_at
20
0
20
1
613225.9
P
AFFX-CreX-3_at
19
0
20
0.95
738761.6
P
AFFX-BioB-5_st
11
5
19
0.55
2562.7
A
AFFX-BioB-M_st
6
6
18
0.3
54
A
AFFX-BioB-3_st
4
8
19
0.2
-3166.5
A
AFFX-BioC-5_st
3
7
18
0.15
-4054
A
AFFX-BioC-3_st
6
4
19
0.3
1610.6
A
AFFX-BioDn-5_st
7
5
19
0.35
4284.9
A
AFFX-BioDn-3_st
5
1
19
0.25
4991.5
A
AFFX-CreX-5_st
7
4
19
0.35
2958.4
A
AFFX-CreX-3_st
8
4
18
0.4
3176.7
A
hum_alu_at
64
0
69
0.93
1696256.8
P
AFFX-DapX-5_at
5
5
19
0.25
-252.6
A
Total number of rows:
7129
Table truncated, full table size
220 Kbytes
.
Supplementary data files not provided
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