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Sample GSM2793665 Query DataSets for GSM2793665
Status Public on Mar 19, 2022
Title D4_WT
Sample type SRA
 
Source name mouse embryonic stem cell
Organism Mus musculus
Characteristics strain: 129
genotype: wild type
Extracted molecule total RNA
Extraction protocol Total RNA is extracted from cells using RNeasy Mini Kit (Qiagen)
RNA libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model BGISEQ-500
 
Description LIF withdrawal for 96h
Data processing Basecalls performed using the software Zebra call
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to mm8 whole genome using Bowtie2.
Fragments Per Kilobase per Million is calculated to represent the gene expression level
Genome_build: mm8
Supplementary_files_format_and_content: tab-delimited FPKM files include FPKM values for each Sample ...
 
Submission date Sep 26, 2017
Last update date Mar 20, 2022
Contact name Ni Peiling
E-mail(s) 1787766312@qq.com
Phone 13752270380
Organization name nankai university
Street address Weijin Road
City Tianjin
ZIP/Postal code 300071
Country China
 
Platform ID GPL23479
Series (1)
GSE104242 Transcriptome profiling of WT and Hbxip-KO E14 ESCs in pluripotent condition and during differentiation
Relations
BioSample SAMN07701822
SRA SRX3216163

Supplementary file Size Download File type/resource
GSM2793665_D4_WT.gene.FPKM.txt.gz 279.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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