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Sample GSM2793670 Query DataSets for GSM2793670
Status Public on Mar 19, 2022
Title EB_KO_2
Sample type SRA
 
Source name mouse embryonic stem cell
Organism Mus musculus
Characteristics strain: 129
genotype: Hbxip-/-
Extracted molecule total RNA
Extraction protocol Total RNA is extracted from cells using RNeasy Mini Kit (Qiagen)
RNA libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model BGISEQ-500
 
Description embryoid bodies
Data processing Basecalls performed using the software Zebra call
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to mm8 whole genome using Bowtie2.
Fragments Per Kilobase per Million is calculated to represent the gene expression level
Genome_build: mm8
Supplementary_files_format_and_content: tab-delimited FPKM files include FPKM values for each Sample ...
 
Submission date Sep 26, 2017
Last update date Mar 20, 2022
Contact name Ni Peiling
E-mail(s) 1787766312@qq.com
Phone 13752270380
Organization name nankai university
Street address Weijin Road
City Tianjin
ZIP/Postal code 300071
Country China
 
Platform ID GPL23479
Series (1)
GSE104242 Transcriptome profiling of WT and Hbxip-KO E14 ESCs in pluripotent condition and during differentiation
Relations
BioSample SAMN07701817
SRA SRX3216168

Supplementary file Size Download File type/resource
GSM2793670_EB_KO_2.gene.FPKM.txt.gz 273.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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