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GEO accession:
Sample GSM2816
Query DataSets for GSM2816
Status
Public on Nov 21, 2002
Title
Mnk_3226-T-7
Sample type
RNA
Source name
PBMC from Rhesus Macaque
Organism
Macaca mulatta
Extracted molecule
total RNA
Description
Animal #3226
Typical progression group
Seven weeks Post-Infection with SIV MAC251
Submission date
Nov 21, 2002
Last update date
May 27, 2005
Contact name
Maryanne Vahey
E-mail(s)
mvahey@hivresearch.org
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL80
Series (1)
GSE512
Peripheral Blood Mononuclear Cells of Rhesus Macaques Infected with SIVmac251
Data table header descriptions
ID_REF
Positive
Number of positive probe pairs
Negative
Number of negative probe pairs
Pairs In Avg
Trimmed probe pair set
Pos Fraction
Positive/pairs used
VALUE
Average difference intensity
ABS_CALL
Absolute call of Presence or Absence of gene transcript in sample
Data table
ID_REF
Positive
Negative
Pairs In Avg
Pos Fraction
VALUE
ABS_CALL
AFFX-BioB-5_at
17
1
19
0.85
46365.3
P
AFFX-BioB-M_at
18
0
19
0.9
74283.4
P
AFFX-BioB-3_at
19
0
19
0.95
53916.1
P
AFFX-BioC-5_at
19
0
19
0.95
127913.3
P
AFFX-BioC-3_at
20
0
20
1
139105.1
P
AFFX-BioDn-5_at
18
0
19
0.9
62814.6
P
AFFX-BioDn-3_at
17
0
19
0.85
185322.8
P
AFFX-CreX-5_at
19
0
20
0.95
829201.4
P
AFFX-CreX-3_at
20
0
20
1
1075494.8
P
AFFX-BioB-5_st
5
4
19
0.25
3733.9
A
AFFX-BioB-M_st
4
6
18
0.2
-1615.2
A
AFFX-BioB-3_st
6
8
20
0.3
-7066.4
A
AFFX-BioC-5_st
2
7
17
0.1
-2773.1
A
AFFX-BioC-3_st
5
5
19
0.25
-1
A
AFFX-BioDn-5_st
5
6
19
0.25
5311.3
A
AFFX-BioDn-3_st
5
2
18
0.25
4448.2
A
AFFX-CreX-5_st
7
4
19
0.35
2626.3
A
AFFX-CreX-3_st
7
3
18
0.35
3858.7
A
hum_alu_at
66
0
69
0.96
1821684
P
AFFX-DapX-5_at
3
0
19
0.15
1309.3
A
Total number of rows:
7129
Table truncated, full table size
220 Kbytes
.
Supplementary data files not provided
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