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Sample GSM282129 Query DataSets for GSM282129
Status Public on Nov 24, 2008
Title S404AGR(-)::3
Sample type RNA
 
Source name S404A Glucocorticoid receptor alpha treated for 0 hr, replicate 3
Organism Homo sapiens
Characteristics Human osteosarcoma, female
Extracted molecule total RNA
Extraction protocol The RNeasy RNA extraction kit, with on column DNAse digestion (Qiagen) was used, according to manufacturer's protocol.
Label Cy3
Label protocol Starting with 500ng of total RNA, Cy3 labeled cRNA was produced according to manufacturer’s protocol.
 
Hybridization protocol For each sample, 1.65ug of Cy3 labeled cRNAs were fragmented and hybridized for 17 hours in a rotating hybridization oven.
Scan protocol Slides were washed and then scanned with an Agilent Scanner.
Description Cells were grown in DMEM-F12 medium, supplemented with 10% Fetal Bovine Serum. 48 hour before treatments, cells were placed in DMEM-F12 medium supplemented with 10% charcoal-dextran-treated FBS. Cells were not treated or were treated with 100 nM dexamethasone for 6 hr.
Data processing Data were obtained and processed with the Agilent Feature Extraction Software (v9.5). The Agilent Feature Extraction Software performed error modeling, adjusting for additive and multiplicative noise. The resulting data were imported into Rosetta Resolver (v7.1) and log2 intensities were exported.
 
Submission date Apr 17, 2008
Last update date Jan 05, 2012
Contact name NIEHS Microarray Core
E-mail(s) microarray@niehs.nih.gov, liuliw@niehs.nih.gov
Organization name NIEHS
Department DIR
Lab Microarray Core
Street address 111 T.W. Alexander Drive
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL4133
Series (1)
GSE11205 Glycogen Synthase Kinase-3-beta Regulates Glucocorticoid Signaling by Phosphorylating the Glucocorticoid Receptor

Data table header descriptions
ID_REF Agilent Feature Number
VALUE Log2 intensity exported from Rosetta Resolver

Data table
ID_REF VALUE
44919 11.36197
8563 4.49357
28336 6.95298
5006 15.02176
28801 14.32086
29429 16.76511
38756 8.25839
31922 13.0847
3509 2.62523
27587 12.99105
18581 9.13678
10122 10.20428
14308 5.39864
35097 4.60665
22537 2.33965
1387 8.89467
41336 8.40481
33919 2.39889
24114 13.99443
9363 10.00826

Total number of rows: 40996

Table truncated, full table size 560 Kbytes.




Supplementary file Size Download File type/resource
GSM282129.txt.gz 8.9 Mb (ftp)(http) TXT
GSM282129_US22502625_251485022326_S01_H.tif.gz 61.1 Mb (ftp)(http) TIFF
GSM282129_US22502625_251485022326_S01_L.tif.gz 45.8 Mb (ftp)(http) TIFF
Processed data included within Sample table

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