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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 18, 2008 |
| Title |
umbilical_cord_blood_CD38- |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
191931 |
| Tag Length |
17 |
| |
|
| Source name |
Human umbilical cord blood stem/progenitor cells
|
| Organism |
Homo sapiens |
| Characteristics |
Tissue: umbilical cord blood
Gender: Male/Female
Estimated 6% colony forming cells and 14% lonterm culture-initiating cells
Cell purification method: Immuno-magnetic and Fluorescent Activated Cell Sorting (FACS)
Defining markers: lin-CD34+CD38-CD45RA-CD36-CD71-CD7- (lin = CD2, CD3, CD14, CD16, CD19, CD20, CD24, CD56, CD66b and GlyA)
|
| Biomaterial provider |
Dr. Connie Eaves (ceaves@bccrc.ca), BC Cancer Research Centre
|
| Extracted molecule |
total RNA |
| Extraction protocol |
PicoPureTM (Arcturus, Mountain View, CA)
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| |
|
| Description |
Assays to confirm viability: Colony Forming Cell Assay (CFCs) / Longterm Culture-Initiating Cells (LTC-ICs)
PCR amplification before SAGE
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| |
|
| Submission date |
May 06, 2008 |
| Last update date |
Nov 19, 2008 |
| Contact name |
BCGSC BC Cancer Agency |
| E-mail(s) |
support@mouseatlas.org
|
| Organization name |
Canada's Michael Smith Genome Sciences Centre
|
| Department |
Gene Expression
|
| Lab |
Marco Marra
|
| Street address |
675 West 10th Avenue
|
| City |
Vancouver |
| State/province |
BC |
| ZIP/Postal code |
V5Z 1L3 |
| Country |
Canada |
| |
|
| Platform ID |
GPL1485 |
| Series (1) |
| GSE11795 |
Molecular Profiling of Primitive Hematopoietic Cells Generated In Vitro from Human Embryonic Stem Cells and In Vivo during Embryogenesis |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAAAAAAAAA |
34 |
177.15 |
| AAAAAAAAAAAAAAAAG |
4 |
20.84 |
| AAAAAAAAAAAAAAAAT |
2 |
10.42 |
| AAAAAAAAAAAAAAGAG |
1 |
5.21 |
| AAAAAAAAAAAAACAAA |
1 |
5.21 |
| AAAAAAAAAAAAAGTAG |
1 |
5.21 |
| AAAAAAAAAAAAGAAAA |
2 |
10.42 |
| AAAAAAAAAAAAGCCAA |
1 |
5.21 |
| AAAAAAAAAAAGAAAAA |
1 |
5.21 |
| AAAAAAAAAAAGAAAAG |
2 |
10.42 |
| AAAAAAAAAATACAAAA |
1 |
5.21 |
| AAAAAAAAAGACAATTA |
1 |
5.21 |
| AAAAAAAAGAAAAAAAA |
2 |
10.42 |
| AAAAAAAAGAAGTTTTG |
1 |
5.21 |
| AAAAAAAATTTCCAATG |
1 |
5.21 |
| AAAAAAACTATGCTGCT |
1 |
5.21 |
| AAAAAAAGAACTCCACT |
1 |
5.21 |
| AAAAAAAGAAGAAAAGG |
1 |
5.21 |
| AAAAAAAGCAAAAAAAA |
2 |
10.42 |
| AAAAAAAGCTCATCATC |
1 |
5.21 |
Total number of rows: 53283
Table truncated, full table size 1319 Kbytes.
| Supplementary data files not provided |
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