|
| Status |
Public on Feb 15, 2018 |
| Title |
PAF_KO_1_RNA-seq |
| Sample type |
SRA |
| |
|
| Source name |
PAF knock out APC Min adenoma
|
| Organism |
Mus musculus |
| Characteristics |
genotype: PAF KO; APC Min/+
tissue: small intestine
disease state: adenoma
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA extract from mouse intestinal adenomas using Qaigen RNeasy mini kit
RNA libraries were prepared for sequencing using standard BGI and Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
BGISEQ-500 |
| |
|
| Description |
Intestinal adenoma
|
| Data processing |
Sequenced reads were mapped to mm9 whole genome using tophat2
Reads Per Kilobase of exon per Megabase of library size (RPKM) were calculated by Cuffdiff.
Genome_build: mm9
Supplementary_files_format_and_content: text file includes RPKM values for each Sample.
|
| |
|
| Submission date |
Jan 15, 2018 |
| Last update date |
Feb 15, 2018 |
| Contact name |
Bo Xia |
| E-mail(s) |
bxia@houstonmethodist.org
|
| Phone |
7134419140
|
| Organization name |
Houston Methodist
|
| Lab |
Kaifu Chen Lab
|
| Street address |
6670 Bertner Ave, R10-414D
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platform ID |
GPL23479 |
| Series (1) |
| GSE109209 |
mRNA profiles in PAF KO intestinal adenoma |
|
| Relations |
| BioSample |
SAMN08366485 |
| SRA |
SRX3584968 |
