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Sample GSM296393 Query DataSets for GSM296393
Status Public on Apr 07, 2009
Title SAGE_IPF_12
Sample type SAGE
Anchor NlaIII
Tag Count 31932
Tag Length 10
 
Source name Lung biopsy
Organism Homo sapiens
Characteristics Gender: male
Age: 77
Tissue: lung
Biomaterial provider Kevin K Brown & Dolly Kervitsky, National Jewish Medical and Research Center
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from frozen lung tissue using the RNAgents total RNA isolation system (Promega, Madison, WI, USA)
 
Description SAGE library generated from lung biopsy sample
Data processing The SAGE 2000 software version 4.12 (available at http://www.sagenet.org) was used to extract SAGE tags from the original sequence files and remove duplicate ditags.
 
Submission date Jun 03, 2008
Last update date Apr 07, 2009
Contact name Kathy Boon
E-mail(s) boonc@nhlbi.nih.gov
Phone 919-541-4288
Organization name NHLBI/NIEHS
Department Division of Intramural Research
Lab Laboratory of Environmental Lung disease
Street address 111 TW Alexander Dr
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL4
Series (1)
GSE11665 Serial Analysis of Gene Expression molecular signature for disease progression in Idiopathic Pulmonary Fibrosis

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAATCCACT 1 31.32
AAAATCTGTA 1 31.32
AAAATGAAGA 4 125.27
AAAATGACAT 1 31.32
AAAATGCAAA 1 31.32
AAAATGCTGT 1 31.32
AAAATGGAAA 1 31.32
AAAATGGCTA 1 31.32
AAAATGTACT 2 62.63
AAAATGTATT 4 125.27
AAAATGTTAA 1 31.32
AAAATTAGGG 1 31.32
AAAATTATCT 1 31.32
AAAATTGTAT 1 31.32
AAAATTGTTA 2 62.63
AAAATTTAAA 1 31.32
AAAATTTAGA 1 31.32
AAAATTTTTA 1 31.32
AAACAAAAAA 3 93.95
AAACAAAAGA 1 31.32

Total number of rows: 12854

Table truncated, full table size 240 Kbytes.




Supplementary data files not provided

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