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Sample GSM297690 Query DataSets for GSM297690
Status Public on Jun 11, 2008
Title 1M Control 4
Sample type RNA
 
Source name Retina, 1 M Control
Organism Rattus norvegicus
Characteristics Sprague Dawley, male, retina
Extracted molecule total RNA
Extraction protocol Tri-Reagent/BCP ( Molecular Research Center, Cincinnati, OH ). Cleanup with Qiagen ( Valencia, CA ) Rneasy final step
Label Alexa-647 Streptavidin
Label protocol Biotin-labeled cRNA was prepared by linear amplification of the Poly(A)+ RNA population within the total RNA sample
 
Hybridization protocol Arrays were hybridized at 37C for 18h in a shaking incubator.
Scan protocol Arrays were scanned with Axon GenePixPro 4000B (Molecular Devices, Axon Instruments, Union City, CA).
Description Retina, control sample for 1 month post streptozotocin injection experiment
Data processing Raw values represent the final number of the spot after background is subtracted out. Normalized values represent median global normalization method, i.e. raw intensity/median intensity of all spots on the array
 
Submission date Jun 10, 2008
Last update date Jun 10, 2008
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL2896
Series (1)
GSE11733 Whole genome microarray of the retina reveals a progressive response with increasing duration of diabetes.

Data table header descriptions
ID_REF Array specific number based on location of probe
VALUE Normalized signal - raw number/median of all spots on the array

Data table
ID_REF VALUE
1002 0.502563577
1004 0.729201269
1005 25.32596263
1006 4.449018137
1009 2.593577133
1010 0.258219948
1011 1.370513302
1012 1.711346603
1013 7.402837045
1016 0.633731934
1017 0.221595008
1018 0.485863337
1019 0.149967527
1020 12.2161981
1023 1.126366142
1024 0.189418372
1025 0.930502818
1026 2.371355163
1027 2.696184345
1030 0.037770771

Total number of rows: 33911

Table truncated, full table size 614 Kbytes.




Supplementary file Size Download File type/resource
GSM297690.txt.gz 834.8 Kb (ftp)(http) TXT
Processed data included within Sample table
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