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Sample GSM297691 Query DataSets for GSM297691
Status Public on Jun 11, 2008
Title 1M Control 5
Sample type RNA
 
Source name Retina, 1 M Control
Organism Rattus norvegicus
Characteristics Sprague Dawley, male, retina
Extracted molecule total RNA
Extraction protocol Tri-Reagent/BCP ( Molecular Research Center, Cincinnati, OH ). Cleanup with Qiagen ( Valencia, CA ) Rneasy final step
Label Alexa-647 Streptavidin
Label protocol Biotin-labeled cRNA was prepared by linear amplification of the Poly(A)+ RNA population within the total RNA sample
 
Hybridization protocol Arrays were hybridized at 37C for 18h in a shaking incubator.
Scan protocol Arrays were scanned with Axon GenePixPro 4000B (Molecular Devices, Axon Instruments, Union City, CA).
Description Retina, control sample for 1 month post streptozotocin injection experiment
Data processing Raw values represent the final number of the spot after background is subtracted out. Normalized values represent median global normalization method, i.e. raw intensity/median intensity of all spots on the array
 
Submission date Jun 10, 2008
Last update date Jun 10, 2008
Contact name Penn State COM
Organization name Penn State College of Medicine
Department Genome Sciences Facility
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL2896
Series (1)
GSE11733 Whole genome microarray of the retina reveals a progressive response with increasing duration of diabetes.

Data table header descriptions
ID_REF Array specific number based on location of probe
VALUE Normalized signal - raw number/median of all spots on the array

Data table
ID_REF VALUE
1002 0.764556295
1004 1.153501385
1005 23.36187723
1006 6.680586057
1009 4.646933107
1010 0.329206824
1011 2.23229105
1012 1.52134104
1013 12.68600753
1016 0.733256459
1017 0.265159383
1018 0.621239732
1019 0.213747712
1020 15.50670665
1023 1.338835448
1024 0.253450698
1025 1.337207992
1026 4.577781049
1027 1.231950376
1030 0.024080268

Total number of rows: 33911

Table truncated, full table size 614 Kbytes.




Supplementary file Size Download File type/resource
GSM297691.txt.gz 831.5 Kb (ftp)(http) TXT
Processed data included within Sample table
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