NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2990619 Query DataSets for GSM2990619
Status Public on Feb 10, 2018
Title Children with Systemic Lupus Erythematosus rep1
Sample type RNA
 
Source name Children with Systemic Lupus Erythematosus
Organism Homo sapiens
Characteristics disease: Systemic Lupus Erythematosus
tissue: Peripheral blood
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label total RNA
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Transcriptome Array 2.0 were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000 7G.
Description Gene expression data from Children with Systemic Lupus Erythematosus
Data processing The data were analyzed with RMA using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100
 
Submission date Feb 09, 2018
Last update date Feb 10, 2018
Contact name shipeng Li
E-mail(s) shipengli6@163.com
Phone 13311046526
Organization name Beijing children's hospital
Street address Nan Li Shi Road No. 56,Beijing
City beijng
ZIP/Postal code 100045
Country China
 
Platform ID GPL23126
Series (1)
GSE110396 Expression Profile of Noncoding RNAs and mRNA in Children with Systemic Lupus Erythematosus

Data table header descriptions
ID_REF
VALUE Values presented are log2 RMA signal intensity.

Data table
ID_REF VALUE
AFFX-BkGr-GC03_st 5.433858
AFFX-BkGr-GC04_st 4.734985
AFFX-BkGr-GC05_st 5.009571
AFFX-BkGr-GC06_st 4.619455
AFFX-BkGr-GC07_st 4.269942
AFFX-BkGr-GC08_st 4.106607
AFFX-BkGr-GC09_st 3.645361
AFFX-BkGr-GC10_st 3.414316
AFFX-BkGr-GC11_st 3.259028
AFFX-BkGr-GC12_st 3.192202
AFFX-BkGr-GC13_st 2.872359
AFFX-BkGr-GC14_st 2.849662
AFFX-BkGr-GC15_st 2.663837
AFFX-BkGr-GC16_st 2.685851
AFFX-BkGr-GC17_st 2.665149
AFFX-BkGr-GC18_st 2.681742
AFFX-BkGr-GC19_st 2.796808
AFFX-BkGr-GC20_st 2.784544
AFFX-BkGr-GC21_st 2.795602
AFFX-BkGr-GC22_st 3.010075

Total number of rows: 138745

Table truncated, full table size 3669 Kbytes.




Supplementary file Size Download File type/resource
GSM2990619_S1_Clariom_D_Human_.CEL.gz 18.8 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap