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Sample GSM2990620 Query DataSets for GSM2990620
Status Public on Feb 10, 2018
Title Children with Systemic Lupus Erythematosus rep2
Sample type RNA
 
Source name Children with Systemic Lupus Erythematosus
Organism Homo sapiens
Characteristics disease: Systemic Lupus Erythematosus
tissue: Peripheral blood
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label total RNA
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Transcriptome Array 2.0 were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000 7G.
Description Gene expression data from Children with Systemic Lupus Erythematosus
Data processing The data were analyzed with RMA using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100
 
Submission date Feb 09, 2018
Last update date Feb 10, 2018
Contact name shipeng Li
E-mail(s) shipengli6@163.com
Phone 13311046526
Organization name Beijing children's hospital
Street address Nan Li Shi Road No. 56,Beijing
City beijng
ZIP/Postal code 100045
Country China
 
Platform ID GPL23126
Series (1)
GSE110396 Expression Profile of Noncoding RNAs and mRNA in Children with Systemic Lupus Erythematosus

Data table header descriptions
ID_REF
VALUE Values presented are log2 RMA signal intensity.

Data table
ID_REF VALUE
AFFX-BkGr-GC03_st 5.298273
AFFX-BkGr-GC04_st 5.110715
AFFX-BkGr-GC05_st 5.034877
AFFX-BkGr-GC06_st 4.884844
AFFX-BkGr-GC07_st 4.381121
AFFX-BkGr-GC08_st 3.993266
AFFX-BkGr-GC09_st 3.831044
AFFX-BkGr-GC10_st 3.723462
AFFX-BkGr-GC11_st 3.374367
AFFX-BkGr-GC12_st 3.239048
AFFX-BkGr-GC13_st 3.03495
AFFX-BkGr-GC14_st 2.792306
AFFX-BkGr-GC15_st 2.718438
AFFX-BkGr-GC16_st 2.712313
AFFX-BkGr-GC17_st 2.649451
AFFX-BkGr-GC18_st 2.670702
AFFX-BkGr-GC19_st 2.76152
AFFX-BkGr-GC20_st 2.736668
AFFX-BkGr-GC21_st 2.759957
AFFX-BkGr-GC22_st 2.959

Total number of rows: 138745

Table truncated, full table size 3668 Kbytes.




Supplementary file Size Download File type/resource
GSM2990620_S2_Clariom_D_Human_.CEL.gz 18.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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