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Sample GSM3014604 Query DataSets for GSM3014604
Status Public on Feb 14, 2019
Title APT021
Sample type RNA
 
Source name Primary Tumor
Organism Homo sapiens
Characteristics tissue: Primary Tumor
disease state: Wilms tumor
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Midi kit. Integrity, size and quantification of total RNA was assessed using a 2100 BioAnalyzer (Agilent, Santa Clara, CA).
Label biotin
Label protocol Sense target cDNA was prepared from 100ng of total RNA using the Affymetrix GeneChip WT Plus (Applied Biosystems P/N 902281). cDNA was fragmented and biotin-labeled using the GeneChip(tm) WT Terminal Labeling Kit (Applied Biosystems P/N 900670).
 
Hybridization protocol Five micrograms of cDNA was hybridized for 16h at 45C on a Clariom S Human GeneChip array.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
Data processing Probe signals were quantile normalized and summarized by the RMA algorithm using the Affymetrix Expression Console software v1.1
 
Submission date Feb 15, 2018
Last update date Feb 14, 2019
Contact name Tong Lin
Organization name St. Jude Children's Research Hospital
Department Biostatistics
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL23126
Series (2)
GSE110696 Gene expression data comparing Wilms tumor primary samples to patient-derived xenografts
GSE110699 Comparing Wilms tumor primary samples to patient-derived xenografts

Data table header descriptions
ID_REF
VALUE log2 RMA signal

Data table
ID_REF VALUE
TC0100006437.hg.1 4.062207
TC0100006476.hg.1 6.186453
TC0100006479.hg.1 6.528665
TC0100006480.hg.1 5.468676
TC0100006483.hg.1 5.6653
TC0100006486.hg.1 6.517704
TC0100006490.hg.1 5.060825
TC0100006492.hg.1 5.355337
TC0100006494.hg.1 6.345019
TC0100006497.hg.1 5.442679
TC0100006499.hg.1 5.844526
TC0100006501.hg.1 5.280519
TC0100006502.hg.1 4.310103
TC0100006514.hg.1 5.349008
TC0100006516.hg.1 6.228663
TC0100006517.hg.1 4.158372
TC0100006524.hg.1 5.694711
TC0100006540.hg.1 4.442165
TC0100006548.hg.1 3.743491
TC0100006550.hg.1 8.245647

Total number of rows: 24351

Table truncated, full table size 659 Kbytes.




Supplementary file Size Download File type/resource
GSM3014604_APT021.CEL.gz 1.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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