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Sample GSM303349 Query DataSets for GSM303349
Status Public on Sep 30, 2008
Title CTC_Head&Neck_carcinoma_MD_SJR2T_AG
Sample type SAGE
Anchor NlaIII
Tag Count 47031
Tag Length 10
 
Source name Laryngeal Squamous Cell Carcinoma (LSCC)
Organism Homo sapiens
Characteristics Aggressive Laryngeal Squamous Cell Carcinoma (LSCC): T4N2bM0, male, 73 years old
Biomaterial provider Eloiza H. Tajara
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using TRIzol Reagent and treated with DNase (Invitrogen Corporation, Carlsbad, CA, USA)
 
Description Larynx cancer sample with lymph node metastasis
 
Submission date Jul 03, 2008
Last update date Nov 19, 2008
Contact name Daniel Guariz Pinheiro
E-mail(s) dgpinheiro@usp.br
Phone +55-16-2101-9300
Organization name Faculdade de Medicina de Ribeirão Preto (Universidade de São Paulo)
Department Departamento de Genética
Lab Laboratório de Genética Molecular e Bioinformática
Street address Rua Tenente Catão Roxo, 2501
City Ribeirão Preto
State/province São Paulo
ZIP/Postal code 14051-140
Country Brazil
 
Platform ID GPL4
Series (1)
GSE11986 Gene expression profiles of head and neck squamous cell carcinoma

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
CCCATCGTCC 593 12608.70
GAAATAAAGC 572 12162.19
ATAATTCTTT 454 9653.21
GATCTCTTGG 411 8738.92
GAGGGAGTTT 361 7675.79
CCTAGCTGGA 340 7229.27
CAGGTTTCAT 326 6931.60
CTGGGTTAAT 324 6889.07
GCCCCTGCTG 323 6867.81
TTCAATAAAA 299 6357.51
TTGGTCCTCT 283 6017.31
GGGCTGGGGT 250 5315.64
CACAAACGGT 224 4762.82
GGATTTGGCC 220 4677.77
TAATAAAGGT 217 4613.98
TAAGGAGCTG 216 4592.72
GCATAATAGG 207 4401.35
TACCTGCAGA 194 4124.94
AGGAAAGCTG 194 4124.94
CAATAAATGT 187 3976.10

Total number of rows: 17084

Table truncated, full table size 318 Kbytes.




Supplementary data files not provided

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