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Sample GSM3070096 Query DataSets for GSM3070096
Status Public on Oct 10, 2018
Title SA03
Sample type SRA
 
Source name Hippocampus_saline
Organism Mus musculus
Characteristics strain: C57BL/6
age: post natal day 14
treated with: Saline (i.p. injection) for 2 hours
tissue: Hippocampus
Treatment protocol Mice were treated with saline or 10 mg/kg LPS for two hours.
Extracted molecule polyA RNA
Extraction protocol Single cells were captured and lysed on the 10x Chromium Controller instrument (10x Genomics).
Standard 10x Genomics scRNA-seq library construction protocol was used to construct the library
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Data processing The sequencing data were was processed with the 10X Cell Ranger v2.1.
Genome_build: mm10
Supplementary_files_format_and_content:  csv files contain per-gene, per-cell expression and were created using cellranger mat2csv
 
Submission date Mar 28, 2018
Last update date Oct 12, 2018
Contact name Xiang Yu
E-mail(s) yuxiang@ion.ac.cn
Organization name Institute of Neuroscience, Chinese Academy of Sciences
Street address 320 Yue Yang Road
City Shanghai
ZIP/Postal code 200031
Country China
 
Platform ID GPL24247
Series (1)
GSE112436 PDGFRβ Cells Rapidly Relay Inflammatory Signal from the Circulatory System to Neurons via Chemokine CCL2
Relations
BioSample SAMN08804972
SRA SRX3856558

Supplementary file Size Download File type/resource
GSM3070096_SA03.csv.gz 11.5 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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