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Sample GSM30825 Query DataSets for GSM30825
Status Public on Oct 12, 2004
Title RD01D008
Sample type RNA
 
Source name whole head
Organism Drosophila melanogaster
Extracted molecule total RNA
 
Description Whole heads of Canton-S flie were seperated from bodies using liquid nitrogen freezing and sieve (0.710 mm) seperation. About 100 seperated whole fly heads were homoginized in 0.5 ml Trizol (Invitrogen). Then 0.1 ml chloroform was added. After vigorous vortexing and centrifugation at 12,000 g for 15 minuntes, 0.28 ml of the aquous phase sample was transfered to a new tube, mixed with 0.25 ml 2-isopropanol, then loaded on a RNeasy column (Qiagen), the RNA sample was further purified by the RNeasy kit. Targets were produced using standard Affymetrix procedures from about 10 ug of total RNA. 10 ug of cRNA was used for hybridization.
This sample is whole head sample 2 of Canton-S.
Keywords = Drosophila
Keywords = mRNA tagging
Keywords = photoreceptor cell-specific genes
 
Submission date Sep 20, 2004
Last update date May 27, 2005
Contact name Zhiyong Yang
E-mail(s) zhiyongy@bcm.tmc.edu
Phone 713-7988168
Organization name Baylor College of Medicine
Street address
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL72
Series (1)
GSE1790 Isolation of mRNA from fly photoreceptor cells by mRNA tagging

Data table header descriptions
ID_REF gene specific probe set
VALUE the abundance of a transcript measured as model-based expression index by PM-only model using dChip (version 1.3) program
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
SE standard error

Data table
ID_REF VALUE ABS_CALL SE
AFFX-MurIL2_at 48.5527 A 2.18126
AFFX-MurIL10_at 89.4008 A 4.25899
AFFX-MurIL4_at 57.4029 A 1.71096
AFFX-MurFAS_at 10.9728 A 1.42737
AFFX-BioB-5_at 258.211 P 17.5913
AFFX-BioB-M_at 625.592 P 20.5272
AFFX-BioB-3_at 468.029 P 17.1956
AFFX-BioC-5_at 1337.29 P 60.1501
AFFX-BioC-3_at 1068.47 P 32.8104
AFFX-BioDn-5_at 2381.48 P 87.2305
AFFX-BioDn-3_at 7953.8 P 235.561
AFFX-CreX-5_at 14808.6 P 463.289
AFFX-CreX-3_at 18790.4 P 342.601
AFFX-DapX-5_at 46.4184 A 2.25173
AFFX-DapX-M_at 68.2302 A 2.08446
AFFX-DapX-3_at 53.9883 A 2.31339
AFFX-LysX-5_at 33.5684 A 0.993645
AFFX-LysX-M_at 81.1868 A 3.10779
AFFX-LysX-3_at 91.7659 A 1.28333
AFFX-PheX-5_at 33.2705 A 2.14902

Total number of rows: 14010

Table truncated, full table size 381 Kbytes.




Supplementary data files not provided

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