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Sample GSM30835 Query DataSets for GSM30835
Status Public on Oct 12, 2004
Title RD02D004
Sample type RNA
 
Source name whole head
Organism Drosophila melanogaster
Extracted molecule total RNA
 
Description Whole heads of Rh1-GAL4/P{UAS-dPABP-FLAG} flie were seperated from bodies using liquid nitrogen freezing and sieve (0.710 mm) seperation. About 100 seperated whole fly heads were homoginized in 0.5 ml Trizol (Invitrogen). Then 0.1 ml chloroform was added. After vigorous vortexing and centrifugation at 12,000 g for 15 minuntes, 0.28 ml of the aquous phase sample was transfered to a new tube, mixed with 0.25 ml 2-isopropanol, then loaded on a RNeasy column (Qiagen), the RNA sample was further purified by the RNeasy kit. Targets were produced using standard Affymetrix procedures from about 10 ug of total RNA. 10 ug cRNA was used for hybridization.
This sample is whole head sample 4 of Rh1-GAL4/P{UAS-hPABP-FLAG}.
Keywords = Drosophila
Keywords = mRNA tagging
Keywords = photoreceptor cell-specific genes
 
Submission date Sep 21, 2004
Last update date May 27, 2005
Contact name Zhiyong Yang
E-mail(s) zhiyongy@bcm.tmc.edu
Phone 713-7988168
Organization name Baylor College of Medicine
Street address
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL72
Series (1)
GSE1790 Isolation of mRNA from fly photoreceptor cells by mRNA tagging

Data table header descriptions
ID_REF gene specific probe set
VALUE the abundance of a transcript measured as model-based expression index by PM-only model using dChip (version 1.3) program
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
SE standard error

Data table
ID_REF VALUE ABS_CALL SE
AFFX-MurIL2_at 58.0156 A 1.80449
AFFX-MurIL10_at 83.8079 A 2.78592
AFFX-MurIL4_at 40.0324 A 2.31368
AFFX-MurFAS_at 17.2356 A 1.79652
AFFX-BioB-5_at 232.963 P 10.196
AFFX-BioB-M_at 339.419 P 16.0732
AFFX-BioB-3_at 282.115 P 10.956
AFFX-BioC-5_at 935.741 P 49.5043
AFFX-BioC-3_at 783.093 P 19.582
AFFX-BioDn-5_at 987.195 P 26.7165
AFFX-BioDn-3_at 4536.06 P 285.522
AFFX-CreX-5_at 9640.7 P 350.884
AFFX-CreX-3_at 13233 P 476.035
AFFX-DapX-5_at 58.6326 A 2.36045
AFFX-DapX-M_at 55.119 A 2.07509
AFFX-DapX-3_at 64.0591 A 1.93256
AFFX-LysX-5_at 39.4231 A 1.18247
AFFX-LysX-M_at 76.5779 A 2.28729
AFFX-LysX-3_at 85.3965 P 1.55519
AFFX-PheX-5_at 33.5322 A 1.86478

Total number of rows: 14010

Table truncated, full table size 381 Kbytes.




Supplementary data files not provided

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