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Sample GSM30969 Query DataSets for GSM30969
Status Public on Sep 30, 2004
Title COP#90 U34B
Sample type RNA
 
Source name Heart, Left Ventricle
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description RNA was extracted from the left ventricle of the heart, taken from a single 15 week old inbred rat that was maintained under specific pathogen free conditions. Target cRNA was prepared using the Enzo Bioarray High Yield RNA Transcript Labeling Kit (Enzo Diagnostics, Farmingdale, NY), purified on a column (Rneasy mini kit, Qiagen), and hybridized to commercially available Affymetrix rat GeneChips arrays according to protocols recommended by the manufacturers. Data was analyzed using the GeneChip Expression Analysis Software (Affymetrix).
Keywords = quantitative real-time RT-PCR
Keywords = insulin receptor substrate 2 (Irs2)
Keywords = phosphatidylinositol 3-kinase
Keywords = regulatory subunit 1
Keywords = (Pik3r1)
Keywords = endurance running
Keywords = treadmill running
 
Submission date Sep 24, 2004
Last update date May 27, 2005
Contact name Justin A. Ways
E-mail(s) jways@mco.edu
Phone 419-383-4150
Organization name Medical College of Ohio
Department Physiology and Cardiovascular Genomics
Street address 3035 Arlington Ave.
City Toledo
State/province OH
ZIP/Postal code 43614
Country USA
 
Platform ID GPL86
Series (1)
GSE1795 Expression Profiling of DA, COP, and F1(COPxDA) rat left ventricles

Data table header descriptions
ID_REF
VALUE normalized signal representing quantity of transcript
ABS_CALL absolute detection call where P=present, A=absent, and M=marginal
DETECTION P-VALUE measure of the significance of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 8.9 A 0.814869
AFFX-MurIL10_at 7.2 A 0.834139
AFFX-MurIL4_at 4.3 A 0.772364
AFFX-MurFAS_at 8.7 A 0.544587
AFFX-BioB-5_at 195 P 0.039661
AFFX-BioB-M_at 247.7 P 0.001796
AFFX-BioB-3_at 129.8 P 0.030976
AFFX-BioC-5_at 573.7 P 0.000297
AFFX-BioC-3_at 308.2 P 0.00034
AFFX-BioDn-5_at 505.5 P 0.001796
AFFX-BioDn-3_at 3689.3 P 0.000195
AFFX-CreX-5_at 7511.9 P 0.000044
AFFX-CreX-3_at 8977.3 P 0.000044
AFFX-BioB-5_st 45.6 A 0.340661
AFFX-BioB-M_st 24.7 A 0.617401
AFFX-BioB-3_st 18.4 A 0.932322
AFFX-BioC-5_st 15.1 A 0.916408
AFFX-BioC-3_st 7.2 A 0.897835
AFFX-BioDn-5_st 91 A 0.354453
AFFX-BioDn-3_st 149.2 M 0.046482

Total number of rows: 8791

Table truncated, full table size 267 Kbytes.




Supplementary data files not provided

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