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Sample GSM30979 Query DataSets for GSM30979
Status Public on Sep 30, 2004
Title DA#124 U34B
Sample type RNA
 
Source name Heart, Left Ventricle
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description RNA was extracted from the left ventricle of the heart, taken from a single 15 week old inbred rat that was maintained under specific pathogen free conditions. Target cRNA was prepared using the Enzo Bioarray High Yield RNA Transcript Labeling Kit (Enzo Diagnostics, Farmingdale, NY), purified on a column (Rneasy mini kit, Qiagen), and hybridized to commercially available Affymetrix rat GeneChips arrays according to protocols recommended by the manufacturers. Data was analyzed using the GeneChip Expression Analysis Software (Affymetrix).
Keywords = quantitative real-time RT-PCR
Keywords = insulin receptor substrate 2 (Irs2)
Keywords = phosphatidylinositol 3-kinase
Keywords = regulatory subunit 1
Keywords = (Pik3r1)
Keywords = endurance running
Keywords = treadmill running
 
Submission date Sep 24, 2004
Last update date May 27, 2005
Contact name Justin A. Ways
E-mail(s) jways@mco.edu
Phone 419-383-4150
Organization name Medical College of Ohio
Department Physiology and Cardiovascular Genomics
Street address 3035 Arlington Ave.
City Toledo
State/province OH
ZIP/Postal code 43614
Country USA
 
Platform ID GPL86
Series (1)
GSE1795 Expression Profiling of DA, COP, and F1(COPxDA) rat left ventricles

Data table header descriptions
ID_REF
VALUE normalized signal representing quantity of transcript
ABS_CALL absolute detection call where P=present, A=absent, and M=marginal
DETECTION P-VALUE measure of the significance of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 8.9 A 0.852061
AFFX-MurIL10_at 3.8 A 0.966323
AFFX-MurIL4_at 1.2 A 0.988616
AFFX-MurFAS_at 9.9 A 0.737173
AFFX-BioB-5_at 108.1 A 0.185131
AFFX-BioB-M_at 274.5 P 0.00844
AFFX-BioB-3_at 82.2 A 0.062929
AFFX-BioC-5_at 671.6 P 0.000509
AFFX-BioC-3_at 340.1 P 0.001102
AFFX-BioDn-5_at 582.1 P 0.00141
AFFX-BioDn-3_at 3161.6 P 0.000052
AFFX-CreX-5_at 7694.8 P 0.000044
AFFX-CreX-3_at 8322.3 P 0.000044
AFFX-BioB-5_st 55.6 A 0.340661
AFFX-BioB-M_st 42.7 A 0.617401
AFFX-BioB-3_st 16.7 A 0.868639
AFFX-BioC-5_st 6.2 A 0.979978
AFFX-BioC-3_st 8.5 A 0.760937
AFFX-BioDn-5_st 33.7 A 0.39692
AFFX-BioDn-3_st 83.1 A 0.300606

Total number of rows: 8791

Table truncated, full table size 266 Kbytes.




Supplementary data files not provided

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