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Sample GSM30988 Query DataSets for GSM30988
Status Public on Sep 30, 2004
Title DA#56 U34C
Sample type RNA
 
Source name Heart, Left Ventricle
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description RNA was extracted from the left ventricle of the heart, taken from a single 15 week old inbred rat that was maintained under specific pathogen free conditions. Target cRNA was prepared using the Enzo Bioarray High Yield RNA Transcript Labeling Kit (Enzo Diagnostics, Farmingdale, NY), purified on a column (Rneasy mini kit, Qiagen), and hybridized to commercially available Affymetrix rat GeneChips arrays according to protocols recommended by the manufacturers. Data was analyzed using the GeneChip Expression Analysis Software (Affymetrix).
Keywords = quantitative real-time RT-PCR
Keywords = insulin receptor substrate 2 (Irs2)
Keywords = phosphatidylinositol 3-kinase
Keywords = regulatory subunit 1
Keywords = (Pik3r1)
Keywords = endurance running
Keywords = treadmill running
 
Submission date Sep 24, 2004
Last update date May 27, 2005
Contact name Justin A. Ways
E-mail(s) jways@mco.edu
Phone 419-383-4150
Organization name Medical College of Ohio
Department Physiology and Cardiovascular Genomics
Street address 3035 Arlington Ave.
City Toledo
State/province OH
ZIP/Postal code 43614
Country USA
 
Platform ID GPL87
Series (1)
GSE1795 Expression Profiling of DA, COP, and F1(COPxDA) rat left ventricles

Data table header descriptions
ID_REF
VALUE normalized signal representing quantity of transcript
ABS_CALL absolute detection call where P=present, A=absent, and M=marginal
DETECTION P-VALUE measure of the significance of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 7.6 A 0.876428
AFFX-MurIL10_at 11.5 A 0.617401
AFFX-MurIL4_at 1.7 A 0.927318
AFFX-MurFAS_at 28.7 A 0.41138
AFFX-BioB-5_at 162.6 M 0.050229
AFFX-BioB-M_at 256.9 P 0.004998
AFFX-BioB-3_at 90 P 0.033677
AFFX-BioC-5_at 557.6 P 0.000297
AFFX-BioC-3_at 313.3 P 0.000195
AFFX-BioDn-5_at 498 P 0.002867
AFFX-BioDn-3_at 3578.1 P 0.00039
AFFX-CreX-5_at 6431.3 P 0.000044
AFFX-CreX-3_at 7963.7 P 0.000044
AFFX-BioB-5_st 59.6 A 0.313723
AFFX-BioB-M_st 14.5 A 0.852061
AFFX-BioB-3_st 11.9 A 0.916408
AFFX-BioC-5_st 9.7 A 0.910522
AFFX-BioC-3_st 6 A 0.891021
AFFX-BioDn-5_st 17.8 A 0.440646
AFFX-BioDn-3_st 71 A 0.382599

Total number of rows: 8789

Table truncated, full table size 265 Kbytes.




Supplementary data files not provided

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