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GEO accession:
Sample GSM3101771
Query DataSets for GSM3101771
Status
Public on Jan 01, 2020
Title
ED_MK-2048_25uM_16h_rep3
Sample type
RNA
Source name
Cultured_MK-2048_25uM
Organism
Homo sapiens
Characteristics
cell line: ED
treatment: MK-2048 25uM 16h
Extracted molecule
total RNA
Extraction protocol
RNeasy Mini Kit
Label
biotin
Label protocol
We followed protocol of manual that is GeneChip® WT PLUS Reagent Kit User Manual.
Hybridization protocol
We followed protocol of manual that is GeneChip® WT PLUS Reagent Kit User Manual.
Scan protocol
We followed manufacturer's protocol, and used GeneChip® Scanner 3000 7G.
Data processing
Data acquisition and normalization (SST-RMA) were used Affymetrix® Expression Console™ Software.
Submission date
Apr 17, 2018
Last update date
Jan 01, 2020
Contact name
Emi Ikebe
Organization name
National Institute of Infectious Diseases
Street address
4-7-1, Gakuen
City
Musashimurayama-shi
State/province
Tokyo
ZIP/Postal code
208-0011
Country
Japan
Platform ID
GPL23159
Series (1)
GSE113265
Molecular targets of HIV integrase inhibitor, MK-2048, on ATL cells
Data table header descriptions
ID_REF
VALUE
Normalized intensity.
Data table
ID_REF
VALUE
TC0100006437.hg.1
18.16431
TC0100006476.hg.1
51.75959
TC0100006479.hg.1
360.7885
TC0100006480.hg.1
30.54863
TC0100006483.hg.1
61.94024
TC0100006486.hg.1
88.4167
TC0100006490.hg.1
38.53032
TC0100006492.hg.1
28.74674
TC0100006494.hg.1
690.1427
TC0100006497.hg.1
16.65866
TC0100006499.hg.1
442.4359
TC0100006501.hg.1
575.1347
TC0100006502.hg.1
19.94219
TC0100006514.hg.1
10.31995
TC0100006516.hg.1
43.0584
TC0100006517.hg.1
11.8189
TC0100006524.hg.1
24.60483
TC0100006540.hg.1
45.35566
TC0100006548.hg.1
16.52636
TC0100006550.hg.1
64.77375
Total number of rows:
24351
Table truncated, full table size
658 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM3101771_ED+MK-3.CEL.gz
1.1 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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