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Sample GSM3110583 Query DataSets for GSM3110583
Status Public on Apr 26, 2018
Title HBL-1 treated by EDA replicate 1
Sample type RNA
 
Source name HBL-1 treated by EDA
Organism Homo sapiens
Characteristics cell line: HBL-1
cell type: B Lymphoma cell line
treated with: EDA (1µg/ml) for 6hrs
Treatment protocol BJAB and HBL-1 cell lines were stimulated for 6 hours with recombinant purified APRIL (1µg/ml) or with EDA (1µg/ml) as control.
Growth protocol BJAB and HBL-1 cell lines were cultured in RPMI1640 medium and 10% FCS.
Extracted molecule total RNA
Extraction protocol Total RNAs were purified from cells with the RNeasy Qiagen purification kit following manufacturer's instructions including an on-column DNase I treatment step to remove any residual contaminant DNA.
Label biotin
Label protocol Standard Affymetrix procedures
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Description BH1
RNA expression data from HBL-1 treated by EDA
Data processing Data obtained for the whole set of samples were normalized by RMA.
affymetrix-algorithm-name = sst-rma-gene-full
affymetrix-algorithm-version = 1.0
program-name = Expression Console
program-version = 1.4.1.46
 
Submission date Apr 25, 2018
Last update date Apr 26, 2018
Contact name Jerome Moreaux
E-mail(s) jerome.moreaux@igh.cnrs.fr
Organization name CHRU Montpellier
Department Biological Hematology
Lab Laboratory for Monitoring Innovative Therapies
Street address 80 Av. Augustin Fliche
City Montpellier
ZIP/Postal code 34295
Country France
 
Platform ID GPL23126
Series (1)
GSE113643 Coreceptor delivery of paracrine APRIL to Golgic BCMA lowers immunogenicity of B-cell lymphoma

Data table header descriptions
ID_REF
VALUE normalized

Data table
ID_REF VALUE
AFFX-BkGr-GC03_st 10.462
AFFX-BkGr-GC04_st 7.98164
AFFX-BkGr-GC05_st 7.10753
AFFX-BkGr-GC06_st 6.28569
AFFX-BkGr-GC07_st 5.71043
AFFX-BkGr-GC08_st 5.14828
AFFX-BkGr-GC09_st 4.62178
AFFX-BkGr-GC10_st 4.12584
AFFX-BkGr-GC11_st 3.80677
AFFX-BkGr-GC12_st 3.38215
AFFX-BkGr-GC13_st 2.96469
AFFX-BkGr-GC14_st 2.78203
AFFX-BkGr-GC15_st 2.66811
AFFX-BkGr-GC16_st 2.69179
AFFX-BkGr-GC17_st 2.659
AFFX-BkGr-GC18_st 2.70203
AFFX-BkGr-GC19_st 2.86086
AFFX-BkGr-GC20_st 2.90945
AFFX-BkGr-GC21_st 3.08918
AFFX-BkGr-GC22_st 3.62765

Total number of rows: 138745

Table truncated, full table size 3533 Kbytes.




Supplementary file Size Download File type/resource
GSM3110583_BH1.CEL.gz 26.3 Mb (ftp)(http) CEL
GSM3110583_BH1_Clariom_D_Human_.sst-rma-gene-full.chp.gz 887.9 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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