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Sample GSM313159 Query DataSets for GSM313159
Status Public on Oct 16, 2008
Title Neuroblastoma tumor NB99
Sample type genomic
 
Source name neuroblastic tumor
Organism Homo sapiens
Characteristics neuroblastoma tumor with ALK amplification
stage 4 tumor
Extracted molecule genomic DNA
Extraction protocol Standard DNA extraction protocol
Label biotin
Label protocol Affymetrix SNP array protocol
 
Hybridization protocol Affymetrix SNP array protocol
Scan protocol Hewlett-Packard scanner
Description NB99
Data processing Data were normalized using the ITALICS algorithm (Rigaill et al, Bioinformatics, 2008)
 
Submission date Aug 15, 2008
Last update date Oct 02, 2008
Contact name Olivier Delattre
E-mail(s) olivier.delattre@curie.fr
Phone 33142346681
Fax 33142646630
Organization name Institut Curie
Department Genetics
Lab U830
Street address 26 rue d'Ulm
City Paris
ZIP/Postal code 75248 cedex 05
Country France
 
Platform ID GPL2004
Series (1)
GSE12461 SNP array analysis of neuroblastic tumor NB99

Data table header descriptions
ID_REF
VALUE log of the copy number determined using ITALICS

Data table
ID_REF VALUE
SNP_A-1718890 0.256
SNP_A-1668776 null
SNP_A-1723597 -0.57
SNP_A-1728870 -0.206
SNP_A-1669946 -0.341
SNP_A-1708099 0.34
SNP_A-1716798 0.833
SNP_A-1701872 -0.811
SNP_A-1697748 0.402
SNP_A-1699138 0.111
SNP_A-1750020 -0.338
SNP_A-1646481 -0.078
SNP_A-1701882 -0.538
SNP_A-1701982 -0.352
SNP_A-1749896 0.221
SNP_A-1750090 -0.212
SNP_A-1714480 0.406
SNP_A-1649717 0.131
SNP_A-1703834 0.158
SNP_A-1695724 -0.894

Total number of rows: 56857

Table truncated, full table size 1106 Kbytes.




Supplementary file Size Download File type/resource
GSM313159.CEL.gz 14.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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