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Sample GSM3172798 Query DataSets for GSM3172798
Status Public on Dec 31, 2018
Title normal colon, replicate 9
Sample type RNA
 
Source name normal colon tissue
Organism Homo sapiens
Characteristics disease: normal
Treatment protocol no treatment
Growth protocol no culture
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Affymetrix WT plus kit
 
Hybridization protocol Clariom D array
Scan protocol Affymetrix Model 450 Fluidics Station and Affymetrix Model 3000 7G
Description Gene expression data from normal colon tissue
Data processing Expression Console software (Affymetrix)
 
Submission date Jun 04, 2018
Last update date Dec 31, 2018
Contact name bin zhang
E-mail(s) zhangbin@picb.ac.cn
Phone (65)96100417
Organization name National University of Singapore
Department Cancer Science Institute of Singapore
Street address 14 Medical Drive, #12-01
City Singapore
ZIP/Postal code 117599
Country Singapore
 
Platform ID GPL23126
Series (1)
GSE115261 Expression data of colon adenocarcinoma and normal colon

Data table header descriptions
ID_REF
VALUE log2-sst-rma-gene-full

Data table
ID_REF VALUE
AFFX-BkGr-GC03_st 10.8562
AFFX-BkGr-GC04_st 9.40464
AFFX-BkGr-GC05_st 8.26138
AFFX-BkGr-GC06_st 7.50761
AFFX-BkGr-GC07_st 6.3829
AFFX-BkGr-GC08_st 5.51406
AFFX-BkGr-GC09_st 4.60735
AFFX-BkGr-GC10_st 4.16534
AFFX-BkGr-GC11_st 3.70531
AFFX-BkGr-GC12_st 3.33422
AFFX-BkGr-GC13_st 2.91273
AFFX-BkGr-GC14_st 2.67877
AFFX-BkGr-GC15_st 2.56152
AFFX-BkGr-GC16_st 2.58558
AFFX-BkGr-GC17_st 2.51647
AFFX-BkGr-GC18_st 2.61592
AFFX-BkGr-GC19_st 2.77577
AFFX-BkGr-GC20_st 2.77623
AFFX-BkGr-GC21_st 2.84873
AFFX-BkGr-GC22_st 3.2517

Total number of rows: 138745

Table truncated, full table size 3533 Kbytes.




Supplementary file Size Download File type/resource
GSM3172798_N9_Clariom_D_Human_.CEL.gz 22.7 Mb (ftp)(http) CEL
GSM3172798_N9_Clariom_D_Human_.sst-rma-gene-full.chp.gz 887.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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