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Sample GSM3172800 Query DataSets for GSM3172800
Status Public on Dec 31, 2018
Title colon adenocarcinoma, replicate 1
Sample type RNA
 
Source name COAD tumor
Organism Homo sapiens
Characteristics disease: COAD tumor
Treatment protocol no treatment
Growth protocol no culture
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Affymetrix WT plus kit
 
Hybridization protocol Clariom D array
Scan protocol Affymetrix Model 450 Fluidics Station and Affymetrix Model 3000 7G
Description Gene expression data from COAD
Data processing Expression Console software (Affymetrix)
 
Submission date Jun 04, 2018
Last update date Dec 31, 2018
Contact name bin zhang
E-mail(s) zhangbin@picb.ac.cn
Phone (65)96100417
Organization name National University of Singapore
Department Cancer Science Institute of Singapore
Street address 14 Medical Drive, #12-01
City Singapore
ZIP/Postal code 117599
Country Singapore
 
Platform ID GPL23126
Series (1)
GSE115261 Expression data of colon adenocarcinoma and normal colon

Data table header descriptions
ID_REF
VALUE log2-sst-rma-gene-full

Data table
ID_REF VALUE
AFFX-BkGr-GC03_st 11.3683
AFFX-BkGr-GC04_st 9.73103
AFFX-BkGr-GC05_st 8.46465
AFFX-BkGr-GC06_st 7.59894
AFFX-BkGr-GC07_st 6.52675
AFFX-BkGr-GC08_st 5.53836
AFFX-BkGr-GC09_st 4.68324
AFFX-BkGr-GC10_st 4.20059
AFFX-BkGr-GC11_st 3.77546
AFFX-BkGr-GC12_st 3.33668
AFFX-BkGr-GC13_st 2.99009
AFFX-BkGr-GC14_st 2.68158
AFFX-BkGr-GC15_st 2.56867
AFFX-BkGr-GC16_st 2.55037
AFFX-BkGr-GC17_st 2.50818
AFFX-BkGr-GC18_st 2.61055
AFFX-BkGr-GC19_st 2.75765
AFFX-BkGr-GC20_st 2.80179
AFFX-BkGr-GC21_st 2.86386
AFFX-BkGr-GC22_st 3.23421

Total number of rows: 138745

Table truncated, full table size 3533 Kbytes.




Supplementary file Size Download File type/resource
GSM3172800_T1_Clariom_D_Human_.CEL.gz 22.5 Mb (ftp)(http) CEL
GSM3172800_T1_Clariom_D_Human_.sst-rma-gene-full.chp.gz 887.9 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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