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Sample GSM3172808 Query DataSets for GSM3172808
Status Public on Dec 31, 2018
Title colon adenocarcinoma, replicate 9
Sample type RNA
 
Source name COAD tumor
Organism Homo sapiens
Characteristics disease: COAD tumor
Treatment protocol no treatment
Growth protocol no culture
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Affymetrix WT plus kit
 
Hybridization protocol Clariom D array
Scan protocol Affymetrix Model 450 Fluidics Station and Affymetrix Model 3000 7G
Description Gene expression data from COAD
Data processing Expression Console software (Affymetrix)
 
Submission date Jun 04, 2018
Last update date Dec 31, 2018
Contact name bin zhang
E-mail(s) zhangbin@picb.ac.cn
Phone (65)96100417
Organization name National University of Singapore
Department Cancer Science Institute of Singapore
Street address 14 Medical Drive, #12-01
City Singapore
ZIP/Postal code 117599
Country Singapore
 
Platform ID GPL23126
Series (1)
GSE115261 Expression data of colon adenocarcinoma and normal colon

Data table header descriptions
ID_REF
VALUE log2-sst-rma-gene-full

Data table
ID_REF VALUE
AFFX-BkGr-GC03_st 11.0959
AFFX-BkGr-GC04_st 9.47466
AFFX-BkGr-GC05_st 8.15306
AFFX-BkGr-GC06_st 7.39987
AFFX-BkGr-GC07_st 6.21996
AFFX-BkGr-GC08_st 5.25712
AFFX-BkGr-GC09_st 4.34435
AFFX-BkGr-GC10_st 3.94005
AFFX-BkGr-GC11_st 3.52682
AFFX-BkGr-GC12_st 3.22908
AFFX-BkGr-GC13_st 2.87666
AFFX-BkGr-GC14_st 2.61977
AFFX-BkGr-GC15_st 2.50962
AFFX-BkGr-GC16_st 2.5332
AFFX-BkGr-GC17_st 2.48605
AFFX-BkGr-GC18_st 2.59483
AFFX-BkGr-GC19_st 2.73421
AFFX-BkGr-GC20_st 2.7698
AFFX-BkGr-GC21_st 2.8473
AFFX-BkGr-GC22_st 3.21815

Total number of rows: 138745

Table truncated, full table size 3533 Kbytes.




Supplementary file Size Download File type/resource
GSM3172808_T9_Clariom_D_Human_.CEL.gz 22.7 Mb (ftp)(http) CEL
GSM3172808_T9_Clariom_D_Human_.sst-rma-gene-full.chp.gz 887.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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