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Sample GSM3172809 Query DataSets for GSM3172809
Status Public on Dec 31, 2018
Title colon adenocarcinoma, replicate 10
Sample type RNA
 
Source name COAD tumor
Organism Homo sapiens
Characteristics disease: COAD tumor
Treatment protocol no treatment
Growth protocol no culture
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Affymetrix WT plus kit
 
Hybridization protocol Clariom D array
Scan protocol Affymetrix Model 450 Fluidics Station and Affymetrix Model 3000 7G
Description Gene expression data from COAD
Data processing Expression Console software (Affymetrix)
 
Submission date Jun 04, 2018
Last update date Dec 31, 2018
Contact name bin zhang
E-mail(s) zhangbin@picb.ac.cn
Phone (65)96100417
Organization name National University of Singapore
Department Cancer Science Institute of Singapore
Street address 14 Medical Drive, #12-01
City Singapore
ZIP/Postal code 117599
Country Singapore
 
Platform ID GPL23126
Series (1)
GSE115261 Expression data of colon adenocarcinoma and normal colon

Data table header descriptions
ID_REF
VALUE log2-sst-rma-gene-full

Data table
ID_REF VALUE
AFFX-BkGr-GC03_st 9.60868
AFFX-BkGr-GC04_st 8.14369
AFFX-BkGr-GC05_st 7.36923
AFFX-BkGr-GC06_st 6.49053
AFFX-BkGr-GC07_st 5.60987
AFFX-BkGr-GC08_st 4.76739
AFFX-BkGr-GC09_st 4.07017
AFFX-BkGr-GC10_st 3.7021
AFFX-BkGr-GC11_st 3.36606
AFFX-BkGr-GC12_st 3.08119
AFFX-BkGr-GC13_st 2.79237
AFFX-BkGr-GC14_st 2.6292
AFFX-BkGr-GC15_st 2.51644
AFFX-BkGr-GC16_st 2.5518
AFFX-BkGr-GC17_st 2.51641
AFFX-BkGr-GC18_st 2.61625
AFFX-BkGr-GC19_st 2.74432
AFFX-BkGr-GC20_st 2.79306
AFFX-BkGr-GC21_st 2.83598
AFFX-BkGr-GC22_st 3.24109

Total number of rows: 138745

Table truncated, full table size 3533 Kbytes.




Supplementary file Size Download File type/resource
GSM3172809_T10_Clariom_D_Human_.CEL.gz 22.0 Mb (ftp)(http) CEL
GSM3172809_T10_Clariom_D_Human_.sst-rma-gene-full.chp.gz 888.5 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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