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Sample GSM318338 Query DataSets for GSM318338
Status Public on Sep 05, 2009
Title S_H_rep2
Sample type RNA
 
Source name embryonic heart
Organism Gallus gallus
Characteristics the embryonic heart of Shouguang Chicken in hypoxia
Extracted molecule total RNA
Extraction protocol The extraction of total RNA with TRIzol reagent was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 microg total RNA (Expression Analysis Technical Manual,P/N900223 or 90365, Affymetrix).
 
Hybridization protocol Fragmented cRNA was hybridized to Affymetrix GeneChip® Chicken Genome Array for 16 h at 45°C. The hybridized probe array was automatically washed and then stained with streptavidin-phycoerythrin (SAPE) in a GeneChip® Fluidics Station 450.
Scan protocol The arrays were scanned on a Affymetrix GeneChip® Scanner 3000.
Description Gene expression data from the embryonic heart of Shouguang Chicken in hypoxia.
Data processing The data were analyzed by GeneChip® Operating Software (GCOS) with Affymetrix default analysis settings.
 
Submission date Sep 05, 2008
Last update date Sep 05, 2008
Contact name mei li
E-mail(s) meili.emily@gmail.com
Organization name China Agricultural University
Street address Haidian district
City Beijing
ZIP/Postal code 86100193
Country China
 
Platform ID GPL3213
Series (1)
GSE12675 Hypoxia effect on embryonic hearts of Tibetan Chicken, Dwarf Recessive White Chicken and Shouguang Chicken

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 519.95 P 0.000753643
AFFX-BioB-M_at 617.588 P 9.4506e-05
AFFX-BioB-3_at 468.064 P 0.000146581
AFFX-BioC-5_at 1226.87 P 7.00668e-05
AFFX-BioC-3_at 1088.56 P 4.42873e-05
AFFX-BioDn-5_at 3646.46 P 4.42873e-05
AFFX-BioDn-3_at 7630.1 P 0.000126798
AFFX-CreX-5_at 16749.9 P 5.16732e-05
AFFX-CreX-3_at 25718.2 P 4.42873e-05
AFFX-DapX-5_at 900.562 P 0.00010954
AFFX-DapX-M_at 2263.7 P 0.000389797
AFFX-DapX-3_at 2125.69 P 6.02111e-05
AFFX-LysX-5_at 124.696 P 0.000856509
AFFX-LysX-M_at 226.967 A 0.250796
AFFX-LysX-3_at 373.315 P 0.000169227
AFFX-PheX-5_at 198.155 P 0.000296708
AFFX-PheX-M_at 252.544 P 0.00141043
AFFX-PheX-3_at 393.094 P 0.000662269
AFFX-ThrX-5_at 225.333 P 0.00159257
AFFX-ThrX-M_at 325.355 P 0.000224668

Total number of rows: 38535

Table truncated, full table size 1490 Kbytes.




Supplementary file Size Download File type/resource
GSM318338.CEL.gz 3.3 Mb (ftp)(http) CEL
GSM318338.CHP.gz 208.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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