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Sample GSM318339 Query DataSets for GSM318339
Status Public on Sep 05, 2009
Title S_N_rep1
Sample type RNA
 
Source name embryonic heart
Organism Gallus gallus
Characteristics the embryonic heart of Shouguang Chicken in normoxia
Extracted molecule total RNA
Extraction protocol The extraction of total RNA with TRIzol reagent was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 microg total RNA (Expression Analysis Technical Manual,P/N900223 or 90365, Affymetrix).
 
Hybridization protocol Fragmented cRNA was hybridized to Affymetrix GeneChip® Chicken Genome Array for 16 h at 45°C. The hybridized probe array was automatically washed and then stained with streptavidin-phycoerythrin (SAPE) in a GeneChip® Fluidics Station 450.
Scan protocol The arrays were scanned on a Affymetrix GeneChip® Scanner 3000.
Description Gene expression data from the embryonic heart of Shouguang Chicken in normoxia.
Data processing The data were analyzed by GeneChip® Operating Software (GCOS) with Affymetrix default analysis settings.
 
Submission date Sep 05, 2008
Last update date Sep 05, 2008
Contact name mei li
E-mail(s) meili.emily@gmail.com
Organization name China Agricultural University
Street address Haidian district
City Beijing
ZIP/Postal code 86100193
Country China
 
Platform ID GPL3213
Series (1)
GSE12675 Hypoxia effect on embryonic hearts of Tibetan Chicken, Dwarf Recessive White Chicken and Shouguang Chicken

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 603.931 P 0.000753643
AFFX-BioB-M_at 706.831 P 9.4506e-05
AFFX-BioB-3_at 445.43 P 9.4506e-05
AFFX-BioC-5_at 1654.84 P 5.16732e-05
AFFX-BioC-3_at 1757.43 P 5.16732e-05
AFFX-BioDn-5_at 3535.84 P 4.42873e-05
AFFX-BioDn-3_at 8341.51 P 0.000126798
AFFX-CreX-5_at 17420.9 P 5.16732e-05
AFFX-CreX-3_at 23500.7 P 5.16732e-05
AFFX-DapX-5_at 723.337 P 6.99729e-05
AFFX-DapX-M_at 1734.83 P 0.000753643
AFFX-DapX-3_at 2334.65 P 6.02111e-05
AFFX-LysX-5_at 91.3966 P 0.000169227
AFFX-LysX-M_at 256.65 A 0.147939
AFFX-LysX-3_at 663.402 P 9.4506e-05
AFFX-PheX-5_at 201.808 P 0.000509415
AFFX-PheX-M_at 233.748 P 0.00359458
AFFX-PheX-3_at 330.375 P 0.00618711
AFFX-ThrX-5_at 289.107 P 0.00499819
AFFX-ThrX-M_at 339.69 P 0.000296708

Total number of rows: 38535

Table truncated, full table size 1488 Kbytes.




Supplementary file Size Download File type/resource
GSM318339.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM318339.CHP.gz 207.1 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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