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Sample GSM318343 Query DataSets for GSM318343
Status Public on Sep 05, 2009
Title T_N_rep1
Sample type RNA
 
Source name embryonic heart
Organism Gallus gallus
Characteristics the embryonic heart of Tibetan Chicken in normoxia
Extracted molecule total RNA
Extraction protocol The extraction of total RNA with TRIzol reagent was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 microg total RNA (Expression Analysis Technical Manual,P/N900223 or 90365, Affymetrix).
 
Hybridization protocol Fragmented cRNA was hybridized to Affymetrix GeneChip® Chicken Genome Array for 16 h at 45°C. The hybridized probe array was automatically washed and then stained with streptavidin-phycoerythrin (SAPE) in a GeneChip® Fluidics Station 450.
Scan protocol The arrays were scanned on a Affymetrix GeneChip® Scanner 3000.
Description Gene expression data from the embryonic heart of Tibetan Chicken in normoxia.
Data processing The data were analyzed by GeneChip® Operating Software (GCOS) with Affymetrix default analysis settings.
 
Submission date Sep 05, 2008
Last update date Sep 05, 2008
Contact name mei li
E-mail(s) meili.emily@gmail.com
Organization name China Agricultural University
Street address Haidian district
City Beijing
ZIP/Postal code 86100193
Country China
 
Platform ID GPL3213
Series (1)
GSE12675 Hypoxia effect on embryonic hearts of Tibetan Chicken, Dwarf Recessive White Chicken and Shouguang Chicken

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 485.124 P 0.000753643
AFFX-BioB-M_at 620.43 P 0.000224668
AFFX-BioB-3_at 496.125 P 0.000296708
AFFX-BioC-5_at 1678.51 P 5.16732e-05
AFFX-BioC-3_at 1681.87 P 5.16732e-05
AFFX-BioDn-5_at 3857.87 P 4.42873e-05
AFFX-BioDn-3_at 8168.65 P 0.000126798
AFFX-CreX-5_at 19388.1 P 5.16732e-05
AFFX-CreX-3_at 24907.5 P 4.42873e-05
AFFX-DapX-5_at 693.167 P 0.00010954
AFFX-DapX-M_at 1584.4 P 0.000753643
AFFX-DapX-3_at 1723.13 P 7.00668e-05
AFFX-LysX-5_at 84.5123 P 0.00401447
AFFX-LysX-M_at 199.77 A 0.382599
AFFX-LysX-3_at 322.747 P 0.000169227
AFFX-PheX-5_at 146.319 P 0.000258358
AFFX-PheX-M_at 155.065 P 0.0429619
AFFX-PheX-3_at 399.631 P 0.00179591
AFFX-ThrX-5_at 298.572 P 0.00687065
AFFX-ThrX-M_at 274.705 P 0.000753643

Total number of rows: 38535

Table truncated, full table size 1487 Kbytes.




Supplementary file Size Download File type/resource
GSM318343.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM318343.CHP.gz 206.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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