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Sample GSM318686 Query DataSets for GSM318686
Status Public on Apr 01, 2009
Title wt_tnf_3
Sample type RNA
 
Source name wt 3T3 fibroblasts, stimulated with TNF-alpha
Organism Mus musculus
Characteristics transduced with scrambled shRNA in pSuper-retro-puro
Treatment protocol stimulated 1hr with 5ng/ml TNF-alpha
Extracted molecule total RNA
Extraction protocol Qiaquick
Label biotin
Label protocol Affymetrix GeneChip Whole Transcript (WT) Sense Target Labeling
 
Hybridization protocol according to Affymetrix GeneChip Whole Transcript (WT) Sense Target Labeling manual (version 4)
Scan protocol according to Affymetrix GeneChip Whole Transcript (WT) Sense Target Labeling manual (version 4)
Description stimulated wild-type fibroblasts, biological replicate 3
Data processing RMA algorithm
 
Submission date Sep 08, 2008
Last update date Apr 01, 2009
Contact name Dominic van Essen
Organization name Institute for Research on Cancer & Aging, Nice (IRCAN)
Lab Transcription specificity
Street address 28 Avenue Valombrose
City Nice
ZIP/Postal code 06107
Country France
 
Platform ID GPL6246
Series (1)
GSE12697 Trap-80-dependence of TNF-alpha-induced genes

Data table header descriptions
ID_REF
VALUE RMA probe signal

Data table
ID_REF VALUE
10338001 11.5683
10338002 6.00252
10338003 9.98156
10338004 8.95962
10338005 1.68956
10338006 1.82538
10338007 2.14407
10338008 3.0737
10338009 8.16064
10338010 1.68956
10338011 5.39011
10338012 1.78031
10338013 1.58688
10338014 1.59306
10338015 1.59306
10338016 7.64146
10338017 12.7501
10338018 6.48944
10338019 4.72488
10338020 8.22469

Total number of rows: 35557

Table truncated, full table size 586 Kbytes.




Supplementary file Size Download File type/resource
GSM318686.CEL.gz 3.9 Mb (ftp)(http) CEL
GSM318686.chp.gz 263.7 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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