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Sample GSM319960 Query DataSets for GSM319960
Status Public on Oct 01, 2008
Title 10 dpp total
Sample type SRA
 
Source name testes
Organism Mus musculus
Characteristics 10 dpp MILI heterozygotes
Extracted molecule total RNA
Extraction protocol total RNA was size selected (24-33nt) or MILI and MIWI2 complexes were immunoprecipitated from extarct using specific polyclonal antibodies
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer
 
Description 24-33nt RNA isolated from testes of 10 dpp males (MILI heterozygous)
Data processing sequential ligation of 3' and 5' linkers using T4 RNA ligase follwed by PCR amplification
small RNA
Reads were aligned to the reference genome allowing zero mismatches. Number of mapping in the genome and genomic annotation were extracted.
 
Submission date Sep 11, 2008
Last update date May 15, 2019
Contact name Alexei Aravin
E-mail(s) aravin@cshl.edu
Phone 516-367-8386
Organization name Cold Soring Harbor Lab
Street address 1 Bungtown Rd
City Cold Spring Harbor
State/province NY
ZIP/Postal code 11724
Country USA
 
Platform ID GPL9185
Series (1)
GSE12757 A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice
Relations
SRA SRX003088
BioSample SAMN02195755

Data table header descriptions
SEQUENCE
COUNT number of times sequenced

Data table
SEQUENCE COUNT
AAAAAAAAACAAGAATATGGAGGCTG 0
AAAAAAAAACAAGAGGTAAAGGTGCT 0
AAAAAAAAACAAGAGGTAAAGGTGCTT 0
AAAAAAAAACAAGAGGTAAAGGTGCTTT 0
AAAAAAAAACAAGGACTGGAGAAATG 0
AAAAAAAAACAATAAATGTGAGAGTGTG 0
AAAAAAAAACAATACAAGGACGGAAATC 0
AAAAAAAAACAGCAACGGGAAGGAGA 0
AAAAAAAAACCGTAATGTCAATAATA 0
AAAAAAAAACCTAGGATAGCAAAAAGTCTT 0
AAAAAAAAACCTGGGGCTGGTGAGAT 0
AAAAAAAAACGAAGCAAGGTGGCCAT 1
AAAAAAAAACGGGCTGGTGAGATGGC 1
AAAAAAAAACGTAAAATCTGAGTGTC 0
AAAAAAAAACTATGGGCGAAGGATAG 1
AAAAAAAAACTGCTTACAGAAGAGGG 0
AAAAAAAAACTGGGCTGGTGAGATGGC 0
AAAAAAAAACTGTGTGTGTAACTTGG 0
AAAAAAAAAGAAAACTGCTGCAGATTT 0
AAAAAAAAAGAAAAGAGGTCCCTA 0

Total number of rows: 5043644

Table truncated, full table size 146462 Kbytes.




Supplementary file Size Download File type/resource
GSM319960_AA31_fastq.txt.gz 156.0 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data included within Sample table

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