|
| Status |
Public on Jun 22, 2021 |
| Title |
Arc-pos_migDC_rep1 |
| Sample type |
SRA |
| |
|
| Source name |
Arc-pos_migDC
|
| Organism |
Mus musculus |
| Characteristics |
strain: Arc/Arg3.1-eGFP mice
tissue: skin draining lymph nodes
cell type: migratory dendritic cells (migDC)
cell subtype: Arc/Arg3.1-eGFP-positive
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen RNeasy Micro Kit
NEBNext UltraTM RNA Library Prep Kit for Illumina (New England Biolabs)
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Description |
p205sT1-4-GFP-pos_Broder_S16_L003
|
| Data processing |
STAR aligment
Counting by featureCounts
DESeq2 analysis
Genome_build: mm10
Supplementary_files_format_and_content: raw ir normalized gene counts
|
| |
|
| Submission date |
Jun 22, 2018 |
| Last update date |
Jun 22, 2021 |
| Contact name |
Manuel A Friese |
| E-mail(s) |
manuel.friese@zmnh.uni-hamburg.de
|
| Organization name |
Universitätsklinikum Hamburg-Eppendorf
|
| Department |
Institut für Neuroimmunologie und Multiple Sklerose
|
| Street address |
Falkenried 94
|
| City |
Hamburg |
| ZIP/Postal code |
20251 |
| Country |
Germany |
| |
|
| Platform ID |
GPL21103 |
| Series (1) |
| GSE116161 |
RNA-seq of Arc/Arg3.1-positive versus Arc/Arg3.1-negative skin migratory dendritic cells from healthy mice |
|
| Relations |
| BioSample |
SAMN09470236 |
| SRA |
SRX4283571 |
