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Sample GSM3223 Query DataSets for GSM3223
Status Public on Apr 15, 2004
Title jzo031-rp1-v5_u74av2-met
Sample type RNA
 
Source name retina
Organism Mus musculus
Extracted molecule total RNA
 
Description Mice used were in a mixed background between 129/SvEv and C57BL/6. They were wildtype littermates of Rp1-/- mice used in parallel experiments. At P21, mice were sacrificed, followed by removal of retinal. Each RNA sample included a pool of neural retinas from 3-4 mice. Retinas were all collected at 1-2 pm of the day.
 
Submission date Dec 16, 2002
Last update date Nov 02, 2016
Contact name Jiewu Liu
E-mail(s) jiewu.liu@gmail.com
Phone 901-495-3893
Organization name St. Jude Children's Research Hospital
Department Department of Developmental Neurobiology
Lab Jian Zuo's Lab
Street address 332 N. Lauderdale St.
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL81
Series (2)
GSE122 P21 wildtype
GSE128 Rp1 knockout mice retinal development

Data table header descriptions
ID_REF
Stat Pairs The number of probe pairs in the probe set.
Stat Pairs Used The number of probe pairs in the probe set used in the Detection call.
VALUE A quantitative measure of the relative abundance of a transcript.
ABS_CALL A qualitative measurement indicating if the transcript is detected (Present), not detected (Absent), or marginally detected (Marginal).
Detection p-value A p-value indicating the significance of the Detection call. A Detection p-value measures the probability the the discrimination scores of all probe pairs in the probe set are above a certain level (Tau), and that the target is likely to be Present.

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL Detection p-value
AFFX-MurIL2_at 20 20 74.1 A 0.659339
AFFX-MurIL10_at 20 20 84 A 0.48511
AFFX-MurIL4_at 20 20 38.9 A 0.5
AFFX-MurFAS_at 20 20 23.4 A 0.48511
AFFX-BioB-5_at 20 20 1651.4 P 0.000147
AFFX-BioB-M_at 20 20 4687 P 0.000044
AFFX-BioB-3_at 20 20 2734.1 P 0.000044
AFFX-BioC-5_at 20 20 5152.1 P 0.000044
AFFX-BioC-3_at 20 20 4151.4 P 0.000044
AFFX-BioDn-5_at 20 20 6892.2 P 0.000044
AFFX-BioDn-3_at 20 20 26965.4 P 0.000044
AFFX-CreX-5_at 20 20 59867.2 P 0.000044
AFFX-CreX-3_at 20 20 76335 P 0.000044
AFFX-BioB-5_st 20 20 329.3 P 0.033677
AFFX-BioB-M_st 20 20 375.1 A 0.078002
AFFX-BioB-3_st 20 20 277.7 A 0.39692
AFFX-BioC-5_st 20 20 65.4 A 0.737173
AFFX-BioC-3_st 20 20 40.4 A 0.58862
AFFX-BioDn-5_st 20 20 449.4 P 0.026111
AFFX-BioDn-3_st 20 20 473.8 P 0.005565

Total number of rows: 12488

Table truncated, full table size 395 Kbytes.




Supplementary file Size Download File type/resource
GSM3223_jzo031-rp1-v5-u74av2.CEL.gz 2.7 Mb (ftp)(http) CEL

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