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Sample GSM3229 Query DataSets for GSM3229
Status Public on Apr 15, 2004
Title jzo010-rp1-v5-u74av2-met
Sample type RNA
 
Source name retina
Organism Mus musculus
Extracted molecule total RNA
 
Description Mice used were in a mixed background between 129/SvEv and C57BL/6. They were Rp1 knockout mice (Rp1-/-). At P10, mice were sacrificed, followed by removal of retinal. Each RNA sample included a pool of neural retinas from 3-4 mice. Retinas were all collected at 1-2 pm of the day.
 
Submission date Dec 16, 2002
Last update date Nov 02, 2016
Contact name Jiewu Liu
E-mail(s) jiewu.liu@gmail.com
Phone 901-495-3893
Organization name St. Jude Children's Research Hospital
Department Department of Developmental Neurobiology
Lab Jian Zuo's Lab
Street address 332 N. Lauderdale St.
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL81
Series (2)
GSE124 P10 knockout
GSE128 Rp1 knockout mice retinal development

Data table header descriptions
ID_REF
Stat Pairs The number of probe pairs in the probe set.
Stat Pairs Used The number of probe pairs in the probe set used in the Detection call.
VALUE A quantitative measure of the relative abundance of a transcript.
ABS_CALL A qualitative measurement indicating if the transcript is detected (Present), not detected (Absent), or marginally detected (Marginal).
Detection p-value A p-value indicating the significance of the Detection call. A Detection p-value measures the probability the the discrimination scores of all probe pairs in the probe set are above a certain level (Tau), and that the target is likely to be Present.

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL Detection p-value
AFFX-MurIL2_at 20 20 16.8 A 0.916408
AFFX-MurIL10_at 20 20 61.4 A 0.48511
AFFX-MurIL4_at 20 20 24.3 A 0.645547
AFFX-MurFAS_at 20 20 57.8 A 0.205732
AFFX-BioB-5_at 20 20 1301.3 P 0.000225
AFFX-BioB-M_at 20 20 2377.9 P 0.000044
AFFX-BioB-3_at 20 20 1459.7 P 0.000052
AFFX-BioC-5_at 20 20 3291.1 P 0.000052
AFFX-BioC-3_at 20 20 2867.9 P 0.000095
AFFX-BioDn-5_at 20 20 4399.9 P 0.000044
AFFX-BioDn-3_at 20 20 14631.7 P 0.000052
AFFX-CreX-5_at 20 20 29983.5 P 0.000044
AFFX-CreX-3_at 20 20 38513.7 P 0.000044
AFFX-BioB-5_st 20 20 175 A 0.327079
AFFX-BioB-M_st 20 20 59.2 A 0.354453
AFFX-BioB-3_st 20 20 252.4 A 0.440646
AFFX-BioC-5_st 20 20 46.4 A 0.686277
AFFX-BioC-3_st 20 20 19.7 A 0.645547
AFFX-BioDn-5_st 20 20 752 P 0.00762
AFFX-BioDn-3_st 20 20 696.6 P 0.012547

Total number of rows: 12488

Table truncated, full table size 396 Kbytes.




Supplementary file Size Download File type/resource
GSM3229_jzo010-rp1-v5-u74av2.CEL.gz 2.7 Mb (ftp)(http) CEL

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