|
| Status |
Public on May 25, 2009 |
| Title |
Mouse (Coco/KO)_soleus_11months_rep1 |
| Sample type |
RNA |
| |
|
| Source name |
soleus, male, 11months
|
| Organism |
Mus musculus |
| Characteristics |
mouse strain: Coco/KO (CBB6F1xFVB/n), Sex: Male, Muscle: soleus, Age: 11 months
|
| Treatment protocol |
Male, 11 month old mice (either wild-type or Coco/KO), were sacrificed, and then the soleus muscles excised and snap frozen in liquid nitrogen.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Whole soleus muscles were excised from recently euthanased mice before snap freezing in liquid nitrogen. Each soleus was cut into cryostat sections (10 microns) which were kept frozen in a dry ice-chilled tube until the addition of 1ml of TriReagent (Sigma). The TriReagent protocol was followed, except that instead of resuspending the RNA pellet into water as a final step, the pellet was resuspended into 600 microlitres of RLT buffer from the RNeasyPlus kit (Qiagen), and then the manufacturer's instructions for this kit followed from there.
|
| Label |
biotin
|
| Label protocol |
Illumina TotalPrep RNA Amplification kit (Ambion) as per manufacturer's instructions
|
| |
|
| Hybridization protocol |
1.5 micrograms of cRNA per sample was hybridized onto the array for 17 hours at 58 degrees celcius.
|
| Scan protocol |
The chip was scanned using an Illumina BeadScan
|
| Description |
4068846025 A
|
| Data processing |
The background was substracted using Illumina BeadStudio software. Data normalization (as per Lin, Du, Huber & Kibbe (2008), Nucleic Acids Res 36, e11) and differential gene expression analysis (Bioconductor lumi and Limma software packages) was performed by Creative Biomics (http://www.creative-biomics.com/)
|
| |
|
| Submission date |
Sep 22, 2008 |
| Last update date |
May 10, 2009 |
| Contact name |
Kristen Jean Nowak |
| E-mail(s) |
knowak@cyllene.uwa.edu.au
|
| Phone |
+61-8-93467377
|
| Fax |
+61-8-93461818
|
| Organization name |
University of Western Australia/WA Institute for Medical Research
|
| Department |
Centre for Medical Research
|
| Lab |
Molecular Genetics
|
| Street address |
WAIMR, B Block, QEII Medical Centre
|
| City |
Nedlands |
| State/province |
WA |
| ZIP/Postal code |
6009 |
| Country |
Australia |
| |
|
| Platform ID |
GPL6105 |
| Series (1) |
| GSE12882 |
Replacing skeletal muscle alpha-actin with cardiac actin in mouse skeletal muscle |
|
