|
Status |
Public on May 25, 2009 |
Title |
Mouse (Wildtype)_soleus_11months_rep2 |
Sample type |
RNA |
|
|
Source name |
soleus, male, 11months
|
Organism |
Mus musculus |
Characteristics |
Mouse strain: Wildtype (CBB6F1xFVB/n), Sex: Male, Muscle: soleus, Age: 11 months
|
Treatment protocol |
Male, 11 month old mice (either wild-type or Coco/KO), were sacrificed, and then the soleus muscles excised and snap frozen in liquid nitrogen.
|
Extracted molecule |
total RNA |
Extraction protocol |
Whole soleus muscles were excised from recently euthanased mice before snap freezing in liquid nitrogen. Each soleus was cut into cryostat sections (10 microns) which were kept frozen in a dry ice-chilled tube until the addition of 1ml of TriReagent (Sigma). The TriReagent protocol was followed, except that instead of resuspending the RNA pellet into water as a final step, the pellet was resuspended into 600 microlitres of RLT buffer from the RNeasyPlus kit (Qiagen), and then the manufacturer's instructions for this kit followed from there.
|
Label |
biotin
|
Label protocol |
Illumina TotalPrep RNA Amplification kit (Ambion) as per manufacturer's instructions
|
|
|
Hybridization protocol |
1.5 micrograms of cRNA per sample was hybridized onto the array for 17 hours at 58 degrees celcius.
|
Scan protocol |
The chip was scanned using an Illumina BeadScan
|
Description |
4068846025 E
|
Data processing |
The background was substracted using Illumina BeadStudio software. Data normalization (as per Lin, Du, Huber & Kibbe (2008), Nucleic Acids Res 36, e11) and differential gene expression analysis (Bioconductor lumi and Limma software packages) was performed by Creative Biomics (http://www.creative-biomics.com/)
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|
|
Submission date |
Sep 22, 2008 |
Last update date |
May 10, 2009 |
Contact name |
Kristen Jean Nowak |
E-mail(s) |
knowak@cyllene.uwa.edu.au
|
Phone |
+61-8-93467377
|
Fax |
+61-8-93461818
|
Organization name |
University of Western Australia/WA Institute for Medical Research
|
Department |
Centre for Medical Research
|
Lab |
Molecular Genetics
|
Street address |
WAIMR, B Block, QEII Medical Centre
|
City |
Nedlands |
State/province |
WA |
ZIP/Postal code |
6009 |
Country |
Australia |
|
|
Platform ID |
GPL6105 |
Series (1) |
GSE12882 |
Replacing skeletal muscle alpha-actin with cardiac actin in mouse skeletal muscle |
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