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Status |
Public on Mar 19, 2019 |
Title |
HS578T cells - pcDNA 3 with cloned EP300 cDNA - biological sample 1 |
Sample type |
RNA |
|
|
Source name |
Total RNA isolated from cells in culture
|
Organism |
Homo sapiens |
Characteristics |
transfection: pcDNA 3 with cloned EP300 cDNA tumor: breast cancer cell line: HS578T
|
Growth protocol |
Cells were grown in low-glucose DMEM containing 10% fetal calf serum, glutamine, insulin and G418
|
Extracted molecule |
total RNA |
Extraction protocol |
Qiagen Rneasy total RNA extraction
|
Label |
Biotin
|
Label protocol |
Affymetrix GeneChipTM WT PLUS Reagent Kit
|
|
|
Hybridization protocol |
Following fragmentation and labeling, 3.5 µg of ss-cDNA were hybridized for 16 hr at 45°C on GeneChip® Cartridge Array. GeneChips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix, P/N 00-0079).
|
Scan protocol |
GeneChips were scanned using the GeneChip® Scanner 3000 7G.
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Data processing |
The data were analyzed with Partek Genomics Suite version 6.6 using Affymetrix default analysis settings and global scaling as normalization method.
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|
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Submission date |
Jun 28, 2018 |
Last update date |
Mar 19, 2019 |
Contact name |
Ernesto Yague |
E-mail(s) |
ernesto.yague@imperial.ac.uk
|
Organization name |
Imperial College London
|
Department |
Division of Cancer
|
Street address |
Du Cane Road
|
City |
London |
ZIP/Postal code |
W12 0NN |
Country |
United Kingdom |
|
|
Platform ID |
GPL23159 |
Series (1) |
GSE116370 |
Transcriptome profile of breast cancer HS-578T cells overexpressing EP300 |
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