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Sample GSM325480 Query DataSets for GSM325480
Status Public on Oct 01, 2008
Title colon
Sample type SRA
 
Source name Human colon tissue
Organism Homo sapiens
Characteristics individual human colon
Extracted molecule total RNA
Extraction protocol mRNA is purified from total RNA with oligo-dT magnetic beads. cDNA is synthesized with random primer priming. ds-cDNA is sequenced using Illumina Genome Analyzers as recommended by the manufacturer.
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer
 
Description RNA_seq
Data processing not applicable

realign.txt column headers (7) and header descriptions:
Column I: tag sequence
Column II: alignment score, for 32 bp, 16000 = perfect match, 14593 = 1bp mismatch, 13906 = 2bp mismatch
Column III: # of hit in the genome, 1 = unique hit
Column IV: Chr position
Column V: Chr direction
Column VI: matched genome sequence
Column VII: next best possible alignment score
 
Submission date Sep 30, 2008
Last update date May 15, 2019
Contact name Shujun Luo
E-mail(s) sluo@illumina.com
Organization name Illumina inc
Street address 25861 Industrial Blvd
City Hayward
State/province CA
ZIP/Postal code 94545
Country USA
 
Platform ID GPL9052
Series (1)
GSE12946 Alternative Isoform Regulation in Human Tissue Transcriptomes
Relations
SRA SRX003931
BioSample SAMN02195685

Supplementary file Size Download File type/resource
GSM325480_colon_hg18realign.txt.gz 588.0 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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