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Sample GSM3262261 Query DataSets for GSM3262261
Status Public on Jul 10, 2018
Title Glutamatergic neuron_1210B2
Sample type RNA
 
Source name Glutamatergic neuron induced from iPSC
Organism Homo sapiens
Characteristics cell type: Glutamatergic neuron
iPSc clone: 1210B2
diagnosis: healthy
Growth protocol neurons were induced from iPSCs and cultured in neuron culture medium
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from induced neuron by Rneasy kit (QIAGEN)
Label biotin
Label protocol Biotinylated ss-cDNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (GeneChip™ WT PLUS Reagent Kit)
 
Hybridization protocol Fragmented and labeled ss-cDNA were hybridized for 16 hr at 45℃ on GeneChip Clariom S array, human. GeneChips were washed and stained in the Genechip Fluidics Station 450.
Scan protocol GeneChips were scanned using the Gene chip Scanner 3000 7G (Thermo Fisher Scientific)
Data processing Data were processed using the Transcriptome Analysis Console (TAC) 4.0 Software (Thermo Fisher Scientific).
 
Submission date Jul 09, 2018
Last update date Sep 06, 2019
Contact name Takaya Ishii
Organization name Keio university
Department School of medicine
Lab Physiology
Street address Shinanomachi35
City shinjuku-ku, Tokyo
ZIP/Postal code 160-8582
Country Japan
 
Platform ID GPL23159
Series (1)
GSE116820 Expression data of Glutarmatergic neuron and GABAergic neruon induced from iPSCs

Data table header descriptions
ID_REF
VALUE RMA
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
AFFX-BkGr-GC03_st 8.76073 0.778044
AFFX-BkGr-GC04_st 7.14892 0.900893
AFFX-BkGr-GC05_st 6.7491 0.962806
AFFX-BkGr-GC06_st 6.36869 0.982286
AFFX-BkGr-GC07_st 6.23455 0.965405
AFFX-BkGr-GC08_st 3.42044 0.968346
AFFX-BkGr-GC09_st 2.91163 0.962439
AFFX-BkGr-GC10_st 2.67845 0.943033
AFFX-BkGr-GC11_st 2.44395 0.914361
AFFX-BkGr-GC12_st 2.3197 0.861281
AFFX-BkGr-GC13_st 2.13641 0.890329
AFFX-BkGr-GC14_st 2.13508 0.866963
AFFX-BkGr-GC15_st 2.09187 0.85936
AFFX-BkGr-GC16_st 2.22649 0.829005
AFFX-BkGr-GC17_st 2.3197 0.799197
AFFX-BkGr-GC18_st 2.52109 0.740633
AFFX-BkGr-GC19_st 5.96582 0.606647
AFFX-BkGr-GC20_st 5.93326 0.603816
AFFX-BkGr-GC21_st 6.21018 0.59807
AFFX-BkGr-GC22_st 6.20083 0.591575

Total number of rows: 24351

Table truncated, full table size 905 Kbytes.




Supplementary file Size Download File type/resource
GSM3262261_Glutamatergic_neuron_1210B2.CEL.gz 1.1 Mb (ftp)(http) CEL
GSM3262261_Glutamatergic_neuron_1210B2.chp.gz 271.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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