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Sample GSM3262267 Query DataSets for GSM3262267
Status Public on Jul 10, 2018
Title GABAergic neuron_1210B2
Sample type RNA
 
Source name GABAergic neuron induced from iPSC
Organism Homo sapiens
Characteristics cell type: GABAergic neuron
iPSc clone: 1210B2
diagnosis: healthy
Growth protocol neurons were induced from iPSCs and cultured in neuron culture medium
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from induced neuron by Rneasy kit (QIAGEN)
Label biotin
Label protocol Biotinylated ss-cDNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (GeneChip™ WT PLUS Reagent Kit)
 
Hybridization protocol Fragmented and labeled ss-cDNA were hybridized for 16 hr at 45℃ on GeneChip Clariom S array, human. GeneChips were washed and stained in the Genechip Fluidics Station 450.
Scan protocol GeneChips were scanned using the Gene chip Scanner 3000 7G (Thermo Fisher Scientific)
Data processing Data were processed using the Transcriptome Analysis Console (TAC) 4.0 Software (Thermo Fisher Scientific).
 
Submission date Jul 09, 2018
Last update date Sep 06, 2019
Contact name Takaya Ishii
Organization name Keio university
Department School of medicine
Lab Physiology
Street address Shinanomachi35
City shinjuku-ku, Tokyo
ZIP/Postal code 160-8582
Country Japan
 
Platform ID GPL23159
Series (1)
GSE116820 Expression data of Glutarmatergic neuron and GABAergic neruon induced from iPSCs

Data table header descriptions
ID_REF
VALUE RMA
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
AFFX-BkGr-GC03_st 7.86584 0.759065
AFFX-BkGr-GC04_st 7.01294 0.893436
AFFX-BkGr-GC05_st 7.07373 0.956078
AFFX-BkGr-GC06_st 6.99124 0.971149
AFFX-BkGr-GC07_st 6.2861 0.961459
AFFX-BkGr-GC08_st 3.45537 0.966688
AFFX-BkGr-GC09_st 2.99759 0.95203
AFFX-BkGr-GC10_st 2.79142 0.933652
AFFX-BkGr-GC11_st 2.60249 0.908395
AFFX-BkGr-GC12_st 2.46673 0.85581
AFFX-BkGr-GC13_st 2.3252 0.903142
AFFX-BkGr-GC14_st 2.27508 0.85933
AFFX-BkGr-GC15_st 2.34255 0.848374
AFFX-BkGr-GC16_st 2.43065 0.816234
AFFX-BkGr-GC17_st 2.50516 0.784173
AFFX-BkGr-GC18_st 2.66354 0.729404
AFFX-BkGr-GC19_st 6.10712 0.603236
AFFX-BkGr-GC20_st 6.02466 0.597977
AFFX-BkGr-GC21_st 6.38905 0.594279
AFFX-BkGr-GC22_st 6.34582 0.589128

Total number of rows: 24351

Table truncated, full table size 909 Kbytes.




Supplementary file Size Download File type/resource
GSM3262267_GABAergic_neuron_1210B2.CEL.gz 1.1 Mb (ftp)(http) CEL
GSM3262267_GABAergic_neuron_1210B2.chp.gz 271.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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