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Sample GSM3262269 Query DataSets for GSM3262269
Status Public on Jul 10, 2018
Title GABAergic neuron_BP1-1
Sample type RNA
 
Source name GABAergic neuron induced from iPSC
Organism Homo sapiens
Characteristics cell type: GABAergic neuron
iPSc clone: BP001-1
diagnosis: Bipolar disorder
Growth protocol neurons were induced from iPSCs and cultured in neuron culture medium
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from induced neuron by Rneasy kit (QIAGEN)
Label biotin
Label protocol Biotinylated ss-cDNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (GeneChip™ WT PLUS Reagent Kit)
 
Hybridization protocol Fragmented and labeled ss-cDNA were hybridized for 16 hr at 45℃ on GeneChip Clariom S array, human. GeneChips were washed and stained in the Genechip Fluidics Station 450.
Scan protocol GeneChips were scanned using the Gene chip Scanner 3000 7G (Thermo Fisher Scientific)
Data processing Data were processed using the Transcriptome Analysis Console (TAC) 4.0 Software (Thermo Fisher Scientific).
 
Submission date Jul 09, 2018
Last update date Sep 06, 2019
Contact name Takaya Ishii
Organization name Keio university
Department School of medicine
Lab Physiology
Street address Shinanomachi35
City shinjuku-ku, Tokyo
ZIP/Postal code 160-8582
Country Japan
 
Platform ID GPL23159
Series (1)
GSE116820 Expression data of Glutarmatergic neuron and GABAergic neruon induced from iPSCs

Data table header descriptions
ID_REF
VALUE RMA
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
AFFX-BkGr-GC03_st 8.35244 0.769533
AFFX-BkGr-GC04_st 7.25527 0.86565
AFFX-BkGr-GC05_st 7.26278 0.953248
AFFX-BkGr-GC06_st 6.80065 0.954764
AFFX-BkGr-GC07_st 6.49571 0.955921
AFFX-BkGr-GC08_st 3.6677 0.949836
AFFX-BkGr-GC09_st 3.1309 0.933041
AFFX-BkGr-GC10_st 2.87282 0.91223
AFFX-BkGr-GC11_st 2.67267 0.883543
AFFX-BkGr-GC12_st 2.57611 0.818267
AFFX-BkGr-GC13_st 2.43434 0.862082
AFFX-BkGr-GC14_st 2.4357 0.817249
AFFX-BkGr-GC15_st 2.44559 0.809094
AFFX-BkGr-GC16_st 2.57173 0.767475
AFFX-BkGr-GC17_st 2.65919 0.739001
AFFX-BkGr-GC18_st 2.85134 0.693158
AFFX-BkGr-GC19_st 6.31454 0.595924
AFFX-BkGr-GC20_st 6.15521 0.59072
AFFX-BkGr-GC21_st 6.34779 0.588718
AFFX-BkGr-GC22_st 6.52196 0.583749

Total number of rows: 24351

Table truncated, full table size 911 Kbytes.




Supplementary file Size Download File type/resource
GSM3262269_GABAergic_neuron_BP001-1.CEL.gz 1.1 Mb (ftp)(http) CEL
GSM3262269_GABAergic_neuron_BP001-1.chp.gz 271.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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