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Sample GSM327232 Query DataSets for GSM327232
Status Public on Oct 08, 2008
Title control retina T0-sample5
Sample type RNA
 
Source name unlesioned control retina
Organism Danio rerio
Characteristics wild type, adult Danio retina
Extracted molecule total RNA
Extraction protocol Pico Pure isolation kit (Arcturus, Molecular Devices Corporation)
Label biotin
Label protocol mRNA was amplified from total RNA using the RiboAmp HS RNA amplification kit (Arcturus, Molecular Devices Corporation.
 
Hybridization protocol Following fragmentation, 5ug of cRNA were hybridized on GeneChip Zebrafish Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
Description Gene Expression from unlesioned control retina.
Data processing The data were analyzed with BRB Array Tools 3.6 using default analysis settings and global scaling for RMA normalization.
 
Submission date Oct 06, 2008
Last update date Oct 07, 2008
Contact name Peter F. Hitchcock
E-mail(s) peterh@umich.edu
Phone 734-763-8169
Fax 734-936-7231
Organization name University of Michigan
Department Ophthy and Vis Sci
Street address 1000 Wall Street
City Ann Arbor
State/province MI
ZIP/Postal code 48104
Country USA
 
Platform ID GPL1319
Series (1)
GSE13068 Identification of the molecular signatures integral to regenerating photoreceptors in the retina of the zebrafish

Data table header descriptions
ID_REF
VALUE RMA-calculated Signal intensity

Data table
ID_REF VALUE
AFFX-BioB-3_at 8.298587799
AFFX-BioB-5_at 8.290036201
AFFX-BioB-M_at 8.908928871
AFFX-BioC-3_at 8.643215179
AFFX-BioC-5_at 9.247660637
AFFX-BioDn-3_at 10.73130226
AFFX-BioDn-5_at 9.987990379
AFFX-CreX-3_at 12.35040092
AFFX-CreX-5_at 12.0239954
AFFX-DapX-3_at 2.180286646
AFFX-DapX-5_at 2.199072599
AFFX-DapX-M_at 2.412161112
AFFX-Dr-AB076373-1_at 2.327148438
AFFX-Dr-acta1-3_at 8.404149055
AFFX-Dr-acta1-5_at 5.632745743
AFFX-Dr-acta1-5_x_at 5.243223667
AFFX-Dr-acta1-M_at 4.173811436
AFFX-Dr-AF292559-1_at 2.381952286
AFFX-Dr-AF292559-2_s_at 1.893790841
AFFX-Dr-AF292559-3_s_at 2.230864286

Total number of rows: 15617

Table truncated, full table size 436 Kbytes.




Supplementary file Size Download File type/resource
GSM327232.CEL.gz 1.9 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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