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Sample GSM327233 Query DataSets for GSM327233
Status Public on Oct 08, 2008
Title control retina T0-sample6
Sample type RNA
Source name unlesioned control retina
Organism Danio rerio
Characteristics wild type, adult Danio retina
Extracted molecule total RNA
Extraction protocol Pico Pure isolation kit (Arcturus, Molecular Devices Corporation)
Label biotin
Label protocol mRNA was amplified from total RNA using the RiboAmp HS RNA amplification kit (Arcturus, Molecular Devices Corporation.
Hybridization protocol Following fragmentation, 5ug of cRNA were hybridized on GeneChip Zebrafish Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
Description Gene Expression from unlesioned control retina.
Data processing The data were analyzed with BRB Array Tools 3.6 using default analysis settings and global scaling for RMA normalization.
Submission date Oct 06, 2008
Last update date Oct 07, 2008
Contact name Peter F. Hitchcock
Phone 734-763-8169
Fax 734-936-7231
Organization name University of Michigan
Department Ophthy and Vis Sci
Street address 1000 Wall Street
City Ann Arbor
State/province MI
ZIP/Postal code 48104
Country USA
Platform ID GPL1319
Series (1)
GSE13068 Identification of the molecular signatures integral to regenerating photoreceptors in the retina of the zebrafish

Data table header descriptions
VALUE RMA-calculated Signal intensity

Data table
AFFX-BioB-3_at 9.134313583
AFFX-BioB-5_at 9.015197754
AFFX-BioB-M_at 9.682445526
AFFX-BioC-3_at 9.440867424
AFFX-BioC-5_at 10.12360382
AFFX-BioDn-3_at 11.54432583
AFFX-BioDn-5_at 10.84656334
AFFX-CreX-3_at 13.19690132
AFFX-CreX-5_at 12.77521038
AFFX-DapX-3_at 2.190387011
AFFX-DapX-5_at 2.35813117
AFFX-DapX-M_at 2.35831666
AFFX-Dr-AB076373-1_at 2.81526494
AFFX-Dr-acta1-3_at 3.660847187
AFFX-Dr-acta1-5_at 4.788859367
AFFX-Dr-acta1-5_x_at 4.794164181
AFFX-Dr-acta1-M_at 2.144840002
AFFX-Dr-AF292559-1_at 2.482976198
AFFX-Dr-AF292559-2_s_at 1.825266004
AFFX-Dr-AF292559-3_s_at 1.956045151

Total number of rows: 15617

Table truncated, full table size 436 Kbytes.

Supplementary file Size Download File type/resource
GSM327233.CEL.gz 1.9 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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