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Sample GSM327234 Query DataSets for GSM327234
Status Public on Oct 08, 2008
Title control retina T0-sample7
Sample type RNA
Source name unlesioned control retina
Organism Danio rerio
Characteristics wild type, adult Danio retina
Extracted molecule total RNA
Extraction protocol Pico Pure isolation kit (Arcturus, Molecular Devices Corporation)
Label biotin
Label protocol mRNA was amplified from total RNA using the RiboAmp HS RNA amplification kit (Arcturus, Molecular Devices Corporation.
Hybridization protocol Following fragmentation, 5ug of cRNA were hybridized on GeneChip Zebrafish Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
Description Gene Expression from unlesioned control retina.
Data processing The data were analyzed with BRB Array Tools 3.6 using default analysis settings and global scaling for RMA normalization.
Submission date Oct 06, 2008
Last update date Oct 07, 2008
Contact name Peter F. Hitchcock
Phone 734-763-8169
Fax 734-936-7231
Organization name University of Michigan
Department Ophthy and Vis Sci
Street address 1000 Wall Street
City Ann Arbor
State/province MI
ZIP/Postal code 48104
Country USA
Platform ID GPL1319
Series (1)
GSE13068 Identification of the molecular signatures integral to regenerating photoreceptors in the retina of the zebrafish

Data table header descriptions
VALUE RMA-calculated Signal intensity

Data table
AFFX-BioB-3_at 8.731344223
AFFX-BioB-5_at 8.714015961
AFFX-BioB-M_at 9.323338509
AFFX-BioC-3_at 9.0138731
AFFX-BioC-5_at 9.689981461
AFFX-BioDn-3_at 11.27531242
AFFX-BioDn-5_at 10.42128181
AFFX-CreX-3_at 13.08520508
AFFX-CreX-5_at 12.6395483
AFFX-DapX-3_at 2.079019547
AFFX-DapX-5_at 2.255655766
AFFX-DapX-M_at 2.3186059
AFFX-Dr-AB076373-1_at 2.717903614
AFFX-Dr-acta1-3_at 3.345612764
AFFX-Dr-acta1-5_at 4.604083061
AFFX-Dr-acta1-5_x_at 4.912124157
AFFX-Dr-acta1-M_at 2.306082487
AFFX-Dr-AF292559-1_at 2.207353115
AFFX-Dr-AF292559-2_s_at 1.947524667
AFFX-Dr-AF292559-3_s_at 1.952112913

Total number of rows: 15617

Table truncated, full table size 436 Kbytes.

Supplementary file Size Download File type/resource
GSM327234.CEL.gz 1.9 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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